Table 2 Candidate genes around the reliable QTNs and their functional annotation. The durum (Svevo) gene ID along with direct orthologs in rice is also reported
QTN | Trait | Marker | Gene ID | Gene Description | Rice Ortholog | Rice gene name |
|---|---|---|---|---|---|---|
Q.Adf-5A | ADF | Kukri_rep_c101981_260 | TRITD5Av1G111780 | Non-specific lipid-transfer protein (LTP) | Os12g0115500 | OsLTPL14/OsLTP1.20 |
| Â | Â | Â | TRITD5Av1G111860 | Anthocyanidin 3-O-glucosyltransferase 2 G (UFGT) | NA | NA |
| Â | Â | Â | TRITD5Av1G112460 | Lipid transfer protein (LTP) | Os12g0112401 | NA |
| Â | Â | Â | TRITD5Av1G112990 | Double-stranded RNA-binding protein 3 (HYL1) | NA | NA |
| Â | Â | Â | TRITD5Av1G112500 | Peroxidase (PRX) | Os12g0112000 | OsPRX1 |
Q.Cel-2A | CEL | Ku_c8927_2075 | TRITD2Av1G252600 | Anthocyanin 3'-O-beta-glucosyltransferase (3'GT) | NA | NA |
| Â | Â | Â | TRITD2Av1G253060 | Anaphase promoting complex (APC/C) | Os04g0599800 | OsCDC20 |
| Â | Â | Â | TRITD2Av1G253600 | Anthocyanin 5-aromatic acyltransferase (3AT1) | NA | NA |
Q.Hi-4A | HI | Tdurum_contig42638_383 | TRITD4Av1G259790 | Scarecrow transcription factor family protein | Os06g0105350 | OsGRAS31 |
| Â | Â | Â | TRITD4Av1G259630 | Acetyltransferase component of pyruvate dehydrogenase complex | Os06g0105400 | NA |
| Â | Â | Â | TRITD4Av1G259520 | Mitochondrial pyruvate carrier | Os07g0449100 | NA |
Q.Biomass-2B.1 | BIOMASS | Excalibur_c34937_710 | TRITD2Bv1G002680 | Terpene synthase (TPS) | NA | NA |
| Â | Â | Â | TRITD2Bv1G002820 | Pyruvate dehydrogenase E1 component subunit alpha | Os04g0119400 | NA |
| Â | Â | Â | TRITD2Bv1G002950 | Gibberellin-regulated protein 1 (GASA) | NA | NA |
| Â | Â | Â | TRITD2Bv1G003120 | WRKY transcription factor | Os11g0490900 | OsWRKY72 |
| Â | Â | Â | TRITD2Bv1G003210 | Fatty acyl-CoA reductase 1 G (FAR) | NA | NA |
| Â | Â | Â | TRITD2Bv1G003590 | Sterol 3-beta-glucosyltransferase (UGT80B1) | Os04g0131900 | NA |
| Â | Â | Â | TRITD2Bv1G004160 | Fructokinase-2 (FRK) | Os03g0602600 | OsHSA1 |
| Â | Â | Â | TRITD2Bv1G003650 | Cell differentiation protein RCD1 | Os02g0301700 | NA |
Q.Biomass-4B | BIOMASS | RAC875_c25045_637 | TRITD4Bv1G160470 | 4-coumarate–CoA ligase family protein (4CL) | Os03g0152400 | NA |
| Â | Â | Â | TRITD4Bv1G160730 | Flavin-containing monooxygenase | NA | NA |
| Â | Â | Â | TRITD4Bv1G161530 | Ripening related protein family | Os10g0490666 | NA |
| Â | Â | Â | TRITD4Bv1G160440 | Peroxidase (PRX) | Os03g0152300 | OsPRX36 |
Q.Ndf-4B.1 | NDF | BS00024110_51 | TRITD4Bv1G031160 | Glucuronoxylan 4-O-methyltransferase | Os11g0242600 | NA |
| Â | Â | Â | TRITD4Bv1G031370 | Chlorophyll a-b binding protein, chloroplastic | Os11g0242800 | OsLHCB5 |
| Â | Â | Â | TRITD4Bv1G030990 | ethylene-responsive transcription factor | Os11g0242300 | OsERF19 |
| Â | Â | Â | TRITD4Bv1G031510 | Zinc finger-homeodomain protein 1 | Os11g0243300 | OsZHD4 |
Q.Scsa-1A.2 | SCSa | Tdurum_contig51833_439 | TRITD1Av1G205480 | Late embryogenesis abundant protein | Os05g0542500 | OsLEA3/OsLEA19 |
| Â | Â | Â | TRITD1Av1G205500 | StAR-related lipid transfer protein | Os02g0468400 | NA |
| Â | Â | Â | TRITD1Av1G205630 | Glucuronoxylan 4-O-methyltransferase | NA | NA |
| Â | Â | Â | TRITD1Av1G205550 | Pectin lyase-like superfamily protein | Os05g0542800 | OsPGL9 |
| Â | Â | Â | TRITD1Av1G205720 | MYB transcription factor | NA | NA |
| Â | Â | Â | TRITD1Av1G206070 | Transcription factor GTE1 | Os06g0138000 | NA |
| Â | Â | Â | TRITD1Av1G206530 | Chlorophyll a-b binding protein, chloroplastic | NA | NA |
Q.Scsa-3A | SCSa | RAC875_c3084_415 | TRITD3Av1G277350 | Abscisic stress ripening | Os01g0959100 | OsASR5/OsASR1 |
| Â | Â | Â | TRITD3Av1G277360 | Peroxidase | Os01g0963000 | OsPRX22 |
| Â | Â | Â | TRITD3Av1G277710 | Transcription factor MYB | Os01g0142500 | NA |
| Â | Â | Â | TRITD3Av1G278300 | Cellulose synthase G | NA | NA |
| Â | Â | Â | TRITD3Av1G278410 | GDSL esterase/lipase | Os04g0650200 | OsGELP59 |
| Â | Â | Â | TRITD3Av1G278770 | Photosystem II D2 protein | NA | NA |
| Â | Â | Â | TRITD3Av1G279110 | Beta-fructofuranosidase, insoluble protein | Os01g0966700 | OsCIN4 |
| Â | Â | Â | TRITD3Av1G279470 | Invertase/pectin methylesterase inhibitor family protein | NA | NA |
Q.Scsm-4A | SCSm | RAC875_c18732_193 | TRITD4Av1G122990 | 3-oxoacyl-[acyl-carrier-protein] synthase | NA | NA |
| Â | Â | Â | TRITD4Av1G123370 | ADP-L-glycero-D-manno-heptose-6-epimerase G | NA | NA |
| Â | Â | Â | TRITD4Av1G123360 | WD40 repeat-like protein | Os11g0660300 | OsRBP10 |
Q.Scsm-6B.3 | SCSm | wsnp_BF293311B_Ta_2_3 | TRITD6Bv1G134450 | Hexosyltransferase | Os02g0624400 | OsPGSIP-B1 |
| Â | Â | Â | TRITD6Bv1G134410 | glucan synthase-like 4 G | NA | NA |
| Â | Â | Â | TRITD6Bv1G134360 | MYB | Os02g0624300 | OsMYB30 |
| Â | Â | Â | TRITD6Bv1G134250 | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein | Os02g0623400 | OsG1L3 |
| Â | Â | Â | TRITD6Bv1G134270 | Glycolipid transfer protein domain-containing protein | Os02g0622400 | NA |
Q.Scsm-6B.4 | SCSm | Excalibur_c64119_578 | TRITD6Bv1G003860 | Chalcone synthase | Os10g0168500 | OsPKS19 |
| Â | Â | Â | TRITD6Bv1G004310 | SKP1-like protein | Os02g0101600 | NA |
| Â | Â | Â | TRITD6Bv1G004640 | Aspartate aminotransferase | Os02g0236000 | NA |
| Â | Â | Â | TRITD6Bv1G003910 | B3 domain-containing protein Os03g0164300 | NA | NA |
Q.Scsb-2B | SCSb | Excalibur_c10068_1276 | TRITD2Bv1G246800 | Lipid transfer protein (LTP) | NA | NA |
| Â | Â | Â | TRITD2Bv1G247690 | Flowering Locus T-like protein, putative (FTL) | Os12g0232300 | OsFTL7 |
| Â | Â | Â | TRITD2Bv1G248090 | Sulfotransferase | Os09g0256100 | NA |
| Â | Â | Â | TRITD2Bv1G248160 | Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase G (UGAT) | NA | NA |
| Â | Â | Â | TRITD2Bv1G248240 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Os04g0631600 | OsbHLH068 |
Q.Scsb-3B | SCSb | RFL_Contig3228_2154 | TRITD3Bv1G009930 | Mannose-6-phosphate isomerase (PMI1) | Os01g0127900 | NA |
| Â | Â | Â | TRITD3Bv1G009950 | MYB transcription factor | Os01g0128000 | NA |
| Â | Â | Â | TRITD3Bv1G010560 | Alpha-xylosidase G (XLY1) | NA | NA |
| Â | Â | Â | TRITD3Bv1G010090 | Anthocyanin 5-aromatic acyltransferase-like (F511_15381) | Os06g0145400 | NA |
| Â | Â | Â | TRITD3Bv1G009370 | Dihydroflavonol-4-reductase | Os01g0127500 | NA |
Q.Spl-1A.1 | SPL | D_GBUVHFX01API9H_416 | TRITD1Av1G216220 | Cyclin-D1-binding protein 1 | Os05g0554500 | NA |
| Â | Â | Â | TRITD1Av1G216250 | Gibberellin-regulated family protein | Os10g0115550 | NA |
| Â | Â | Â | TRITD1Av1G217110 | Hexosyltransferase | Os05g0552200 | NA |
| Â | Â | Â | TRITD1Av1G217210 | sucrose synthase 6 (SUSY) | NA | NA |
| Â | Â | Â | TRITD1Av1G218140 | Lipid phosphate phosphatase-like protein | Os05g0549900 | NA |
| Â | Â | Â | TRITD1Av1G218210 | Homeobox protein, putative | Os02g0565600 | Oshox7 |
Q.Spl-3B | SPL | Tdurum_contig12087_190 | TRITD3Bv1G241180 | Transaldolase (TAL) | Os01g0926300 | NA |
| Â | Â | Â | TRITD3Bv1G241450 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Os11g0634700 | OsbHLH132 |
| Â | Â | Â | TRITD3Bv1G241970 | Auxin response factor | Os01g0927600 | OsARF2/OsARF4 |
| Â | Â | Â | TRITD3Bv1G242050 | Transcription factor Inducer of CBF expression 1 | Os01g0928000 | OsbHLH001 |
| Â | Â | Â | TRITD3Bv1G242450 | Transcription factor Sox-9 G | Os01g0928700 | OsLCB2a2 |