Table 4 Distribution of EST-SSR loci in the transcriptome of A. tsaoko
Repeat unit type | Motif | SSR number | Ratio (%) | Dominating motif | ||
|---|---|---|---|---|---|---|
Motif type | Number | Ratio (%) | ||||
Mononucleotide | 2 | 26,742 | 48.11 | A/T | 25,819 | 96.55 |
Dinucleotide | 4 | 12,716 | 22.87 | AG/CT | 7554 | 59.41 |
Trinucleotide | 10 | 13,849 | 24.91 | AGG/CCT | 3390 | 24.48 |
Tetranucleotide | 30 | 1169 | 2.10 | AAAG/CTTT | 197 | 16.85 |
Pentanucleotide | 58 | 548 | 0.99 | AAAAT/ATTTT | 66 | 12.04 |
Hexanucleotide | 72 | 566 | 1.02 | AGGCGG/CCGCCT | 42 | 7.42 |
Total | 176 | 55,590 | Â | Â | Â | Â |