Table 4 Details of selected transcripts from those with the highest levels of upregulation in response to infection with P. ramorum in Japanese larch (JL) and European larch (EL). TAIR annotation descriptions come from The Arabidopsis Information Resource (Arabidopsis.org)
Species | Transcript | Base Mean | Fold Change (daily mean, Log2) | TAIR | other names | Description | GO BP involved in |
|---|---|---|---|---|---|---|---|
JL | GGJA01005380.1 | 1017.2 | 0.284 | AT4G02330 | ATPME41 | Encodes a pectin methylesterase and brassinosteroid regulation. | cell wall modification, pectin catabolic process, response to brassinosteroid, response to cold, response to fungus |
JL | GGJA01018863.1 | 108.4 | 0.283 | AT1G30040 | ATGA2OX2 | gibberellin biosynthetic process, gibberellin catabolic process | |
JL | GGJA01022010.1 | 107.1 | 0.277 | AT4G19810 | CHIC | Encodes a Class V chitinase that is a part of glycoside hydrolase family 18. It primarily acts as an exochitinase. | chitin catabolic process, response to abscisic acid, response to jasmonic acid, response to salt stress |
JL | GGJA01016722.1 | 40.6 | 0.272 | AT3G48520 | CYP94B3 | CYP94B3 is a jasmonoyl-isoleucine-12-hydroxylase that catalyzes the formation of 12-OH-JA-Ile from JA-Ile. By reducing the levels of this the biologically active phytohormone, CYP94B3 attenuates the jasmonic acid signalling cascade. CYP94B3 transcript levels rise in response to wounding. | defence response to insects, response to wounding |
JL | GGJA01032176.1 | 9427.5 | 0.268 | AT4G02780 | ABC33 | Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis | diterpenoid biosynthetic process, gibberellic acid mediated signaling pathway, gibberellin biosynthetic process |
JL | GGJA01034699.1 | 301.8 | 0.266 | AT4G02780 | |||
JL | GGJA01040402.1 | 1231.0 | 0.261 | AT4G02780 | |||
EL | GGJA01037884.1 | 104.9 | 0.341 | AT3G13730 | CYTOCHROME P450 | Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis the CYP450 family. | brassinosteroid biosynthetic process, brassinosteroid homeostasis, leaf development, |
EL | GGJA01022954.1 | 55.5 | 0.300 | AT5G07990 | CYP75B1, CYTOCHROME P450 75B1 | Required for flavonoid 3’ hydroxylase activity. Enzyme abundance relative to Chalcone synthase determines Quercetin/Kaempferol metabolite ratio. The mRNA is cell-to-cell mobile. | flavonoid biosynthetic process, response to auxin |
EL | GGJA01015494.1 | 778.4 | 0.291 | AT1G10360 | GLUTATHIONE S-TRANSFERASE 29, | Encodes glutathione-s-transferase (GST) belonging to the tau class of GSTs | glutathione metabolic process, toxin catabolic process |
EL | GGJA01049582.1 | 1357.9 | 0.283 | AT3G57260 | β-1,3-GLUCANASE | beta 1,3-glucanase | carbohydrate metabolic process, response to cold, systemic acquired resistance |
EL | GGJA01020211.1 | 1175.6 | 0.278 | AT5G20950 | BGLC1 | Encodes a beta-glucosidase involved in xyloglucan metabolism. | glucan catabolic process, xyloglucan biosynthetic process |
EL | GGJA01049373.1 | 292.8 | 0.277 | AT1G10360 | ATGSTU18 | Encodes glutathione transferase belonging to the tau class of GSTs | glutathione metabolic process, toxin catabolic process |