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Table 1 Predicted lectin homologs from the grain and sweet Sorghum bicolor genome assemblies

From: Genome-wide screening of lectin putative genes from Sorghum bicolor L., distribution in QTLs and a probable implications of lectins in abiotic stress tolerance

Race

Lectin Domains

Predicted Genes

Chromosomes Localization

Predicted Signal Classes a

No

%

 

S. bicolor V3.1 (BTx623)

Ricin-B

2

1.7

2, 5

UPS (1), SP (1)

CRA

2

1.7

5, 6

SP (2)

EUL

8

6.7

1, 2, 3, 5

USP (4), IC (3), SP (1)

Hevein

11

9.2

3, 4, 6, 9, 10

SP (11)

Nictaba

17

14.3

1, 2, 3, 4, 5, 6

USP (6), IC (10), TM (1)

JRL

18

15.1

1, 2, 3, 5, 9

USP (8), IC (8), TM (2)

Legume

53

44.5

1, 2, 3, 4, 5, 6, 7, 8, 9, 10

USP (1), IC (2), TM (5), SP (45)

LysM

8

6.7

1, 2, 3, 4, 9, 10

TM (1), SP (7)

S. bicolor V2.1 (Rio)

Ricin-B

2

1.8

2, 5

USP (1), SP (1)

CRA

2

1.8

5, 6

SP (2)

EUL

9

7.9

1, 2, 3, 5, 9

USP (5), IC (2), SP (2)

Hevein

10

8.8

3, 4, 6, 9,10

SP (10)

Nictaba

17

15

1, 2, 3, 4, 5, 6

USP (7), IC (9), SP (1)

JRL

18

15.9

1, 2, 3, 5, 9

USP (7), IC (10), TM (1)

Legume

53

46.9

1, 2, 3, 4, 5, 6, 7, 8, 9, 10

USP (1), IC (4), TM (5), SP (43)

LysM

2

1.8

2, 7

SP (2)

  1. a TM Transmembrane, SP Signal peptide, IC Intercellular and UPS unconventional protein secretions (UPS) from intracellular proteins, which do not possess either a signal peptide or transmembrane domain