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Table 1 Summary of the results from full-length sequencing of 12 samples

From: Full-length transcriptome analysis of maize root tips reveals the molecular mechanism of cold stress during the seedling stage

Sample IDa

Clean Data

Full-length readsc

Total reads number

Clean Numberb

N50 (bp)

Mean length (bp)

Max length (bp)

Reads number

N50 (bp)

Mean length (bp)

Max length (bp)

Mapped reads (Rate)

BCD1

4,298,610

4,127,858

1,183

1,036

24,701

3,609,340

1,034

824

11,258

3,498,849 (96.9%)

BCD2

4,552,299

4,382,518

1,126

984

58,131

3,869,358

986

775

9,704

3,736,319 (96.6%)

BCD3

4,812,931

4,624,033

980

886

42,651

4,101,426

828

682

6,950

3,938,757 (96.0%)

BCK1

6,541,618

6,309,821

695

661

25,330

5,744,254

552

460

8,480

5,421,952 (94.4%)

BCK2

5,594,616

5,389,905

732

696

26,878

4,840,205

590

496

9,278

4,596,506 (95.0%)

BCK3

5,800,487

5,586,539

821

750

95,008

5,030,650

678

547

8,644

4,779,199 (95.0%)

ICD1

4,654,566

4,471,028

1,002

906

71,935

4,051,667

862

697

11,677

3,861,154 (95.3%)

ICD2

3,890,121

3,759,176

1,265

1089

15,250

3,297,036

1,122

881

10,402

3,173,572 (96.3%)

ICD3

4,797,794

4,620,255

1,034

932

14,970

4,085,571

891

722

10,777

3,903,260 (95.5%)

ICK1

6,126,592

5,906,096

750

718

233,119

5,316,572

605

513

9425

4,983,658 (93.7%)

ICK2

6,119,503

5,872,403

698

680

202,515

5,331,339

550

476

10,613

4,998,266 (93.8%)

ICK3

5,523,159

5,322,332

833

772

85,786

4,792,444

684

567

8969

4,527,555 (94.5%)

  1. aSample ID: inbred line (B and I represent B73 and IL85 respectively) + treatment (CK and CD represent control and cold stress respectively) + replication;
  2. bNumber of reads after eliminating rRNA;
  3. cReads with primers at both ends
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BMC Plant Biology

ISSN: 1471-2229

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