Fig. 3

Differentially expressed transcript (DET) identification and functional analysis. Venn diagram for up- (A) and down-regulated (B) DETs for B73 and IL85, where the number in brackets indicates novel identified transcripts. C Statistics of the identified DETs for B73 and IL85; (D), GO enrichment analysis for DETs that were specific or common to B73 and IL85 in the biological process (BP) category, where a dot indicates a GO term, the dot size indicates the transcript number belonging to an individual GO term, the dot colour indicates the p-value of the GO term, and the width of line between two dots indicates the common transcript number of two GO terms. E Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis for DETs that were specific or common to B73 and IL85