Table 4 Transition and Transversion substitutions, their ratio in LSC, IRs, and SSC
Region | Pairwise alignment with Farsetia hamiltonii | Transition substituations | Transversion substituaions | Ts/Tv |
|---|---|---|---|---|
Large Single Copy | Farsetia occidentalis | 142 | 213 | 0.6667 |
Lobularia libyca | 850 | 1016 | 0.8366 | |
Notoceras bicorne | 916 | 1064 | 0.8609 | |
Parolinia ornata | 580 | 641 | 0.9048 | |
Morettia canescens | 702 | 762 | 0.9213 | |
Cochlearia borzaeana | 1500 | 1697 | 0.8839 | |
Megacarpaea polyandra | 996 | 954 | 1.0440 | |
Biscutella laevigata | 1306 | 1340 | 0.9746 | |
Iberis amara | 1276 | 1662 | 0.7677 | |
Inverted Repeat | Farsetia occidentalis | 6 | 15 | 0.4000 |
Lobularia libyca | 61 | 70 | 0.8714 | |
Notoceras bicorne | 74 | 76 | 0.9737 | |
Parolinia ornata | 44 | 56 | 0.7857 | |
Morettia canescens | 45 | 65 | 0.6923 | |
Cochlearia borzaeana | 96 | 121 | 0.7934 | |
Megacarpaea polyandra | 66 | 76 | 0.8684 | |
Biscutella laevigata | 77 | 90 | 0.8556 | |
Iberis amara | 75 | 93 | 0.8065 | |
Small Single Copy | Farsetia occidentalis | 45 | 79 | 0.5696 |
Lobularia libyca | 273 | 375 | 0.7280 | |
Notoceras bicorne | 260 | 359 | 0.7242 | |
Parolinia ornata | 163 | 197 | 0.8274 | |
Morettia canescens | 217 | 271 | 0.8007 | |
Cochlearia borzaeana | 411 | 545 | 0.7541 | |
Megacarpaea polyandra | 291 | 293 | 0.9932 | |
Biscutella laevigata | 418 | 492 | 0.8496 | |
Iberis amara | 384 | 480 | 0.8000 |