Table 2 RNA sequencing data and quality control of G1, G2, G3, Y1, Y2, Y3, R1, R2 and R3
Sample | Raw Reads | Clean Reads | Clean Base(G) | Error Rate (%) | Q20(%) | Q30(%) | GC Content (%) |
|---|---|---|---|---|---|---|---|
G1 | 64,031,252 | 63,110,950 | 9.47 | 0.02 | 97.76 | 93.28 | 43.36 |
G2 | 50,061,894 | 49,243,260 | 7.39 | 0.02 | 97.78 | 93.18 | 43.47 |
G3 | 55,918,654 | 55,020,934 | 8.25 | 0.02 | 97.74 | 93.25 | 43.37 |
Y1 | 52,153,394 | 51,356,658 | 7.70 | 0.02 | 97.86 | 93.66 | 43.39 |
Y2 | 51,487,354 | 50,542,868 | 7.58 | 0.02 | 97.72 | 93.18 | 43.34 |
Y3 | 51,669,070 | 55,320,988 | 8.30 | 0.02 | 97.85 | 93.51 | 43.37 |
R1 | 52,643,062 | 51,082,230 | 7.66 | 0.02 | 97.45 | 92.65 | 43.76 |
R2 | 52,400,068 | 51,685,472 | 7.75 | 0.02 | 97.43 | 92.61 | 43.71 |
R3 | 52,893,044 | 52,217,320 | 7.83 | 0.02 | 97.48 | 92.72 | 43.72 |