Table 2 The performance of prediction model and the number of the proteins for disease-resistance and signal transduction related GO terms. The GO ID, term, and number NGO of protein sequences in a GO term collected from the UniPort database are listed in the first to third columns, respectively. The measurements are listed in the fourth to eighth columns. The number of the proteins belonging to a GO term predicted from non-annotated protein sequences of creeping bentgrass is listed in last column
From: Functional annotation of creeping bentgrass protein sequences based on convolutional neural network
DO ID | Function | NGO | SE% | SP% | PR% | AC% | MCC | Num |
|---|---|---|---|---|---|---|---|---|
GO:0,009,968 | negative regulation of signal transduction | 1730 | 42.3 | 97.3 | 84.4 | 83.0 | 0.52 | 148 |
GO:0,032,102 | negative regulation of response to external stimulus | 542 | 32.7 | 99.4 | 94.9 | 82.0 | 0.49 | 11,555 |
GO:0,044,092 | negative regulation of molecular function | 1944 | 38.4 | 97.6 | 83.3 | 83.7 | 0.49 | 47,437 |
GO:0,032,101 | regulation of response to external stimulus | 1486 | 41.9 | 98.6 | 90.3 | 84.8 | 0.55 | 792 |
GO:0,002,682 | regulation of immune system process | 2368 | 44.0 | 96.3 | 79.8 | 83.1 | 0.51 | 756 |
GO:0,009,607 | response to biotic stimulus | 3184 | 35.2 | 98.1 | 86.6 | 81.8 | 0.48 | 24,287 |
GO:0,006,955 | immune response | 3214 | 34.7 | 97.7 | 83.1 | 82.4 | 0.46 | 1041 |
GO:0,009,719 | response to endogenous stimulus | 2334 | 44.8 | 96.8 | 81.4 | 84.6 | 0.53 | 1035 |
GO:0,048,585 | negative regulation of response to stimulus | 2341 | 35.9 | 97.4 | 83.7 | 80.9 | 0.46 | 402 |
GO:0,002,764 | immune response-regulating signaling pathway | 611 | 47.7 | 96.9 | 84.7 | 84.0 | 0.55 | 1260 |
GO:0,044,093 | positive regulation of molecular function | 2337 | 37.9 | 97.3 | 81.3 | 83.0 | 0.48 | 786 |
GO:0,051,606 | detection of stimulus | 913 | 75.7 | 99.6 | 98.5 | 94.1 | 0.83 | 12 |
GO:0,080,135 | regulation of cellular response to stress | 3819 | 68.4 | 96.4 | 85.7 | 89.8 | 0.70 | 3022 |