Fig. 3

A Differentially expressed transcripts in response to photoperiod in each genotype separately. Horizontal bars represent the total number of differentially expressed transcripts in each genotype. Vertical bars represent the number of differentially expressed genes in each set, with a set being a combination of comparisons. B Number of cycling transcripts whose expression is affected by changes in photoperiod grouped by their phase. C Average expression of transcripts whose expression oscillated during the day grouped by their phase, genotype and condition. D Differences between the estimated phase in long days and short days. Error bars represent the standard deviation of the mean. Different letters in each dot indicate significant differences (p < 0.05, using two-way ANOVA and estimated marginal means). E Average log2 fold change in expression induced by photoperiod in cycling genes grouped by genotype and phase of expression. Error bars represent the standard error of the mean