Table 4 Effects of the QTL-associated SNP markers in the diverse wheat panel
QTL name | Marker | Position | Allele (origin) | Sample size | 2007 SX | 2007 JS | 2007 HB | 2007 SD | 2007 SC | 2008 SX | 2008 JS | 2008 HB | 2008 SD | 2008 SC | 2009 SX | 2009 JS | 2009 HB | 2009 SD | 2009 SC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Qkns.his-7D2–1 | AX-110196726 | 4,390,879 | C/C (Ma) | 347 | 52.185 | 52.391 | 57.197 | 48.319 | 46.821 | 51.844 | 52.094 | 50.900 | 41.278 | 33.542 | 51.789 | 51.159 | 53.268 | 42.665 | 35.141 |
| Â | Â | T/T (N) | 22 | 46.886 | 45.901 | 51.568 | 44.214 | 40.143 | 45.905 | 45.196 | 44.854 | 37.971 | 28.322 | 46.664 | 44.824 | 50.193 | 37.970 | 30.949 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.011 | 0.012 | 0.013 | 0.000 | 0.000 | 0.002 | 0.001 | 0.000 | 0.001 | 0.001 | 0.056 | 0.000 | 0.005 | |
Qkns.his-7D2–2 | AX-108912162 | 526,362,487 | G/G (M) | 170 | 49.392 | 49.051 | 53.359 | 45.375 | 43.675 | 48.710 | 49.125 | 47.614 | 39.999 | 30.759 | 48.493 | 47.112 | 50.408 | 40.163 | 32.548 |
| Â | Â | T/T (Na) | 187 | 54.036 | 54.804 | 60.503 | 50.546 | 48.860 | 54.015 | 54.224 | 53.326 | 42.148 | 35.288 | 54.022 | 54.245 | 55.895 | 44.492 | 36.932 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
AX-111577597 | 530,751,616 | C/C (M) | 188 | 49.849 | 49.422 | 54.022 | 45.448 | 43.797 | 49.167 | 49.029 | 47.573 | 39.946 | 30.792 | 48.920 | 47.310 | 50.889 | 40.772 | 32.924 | |
| Â | Â | T/T (Na) | 169 | 53.776 | 54.794 | 60.135 | 50.660 | 49.067 | 53.811 | 54.571 | 53.355 | 42.333 | 35.309 | 54.040 | 54.441 | 55.505 | 44.047 | 36.804 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
Qkns.his-5A-2 | AX-109980237 | 548,422,922 | 223 (Ma) | C/C | 50.326 | 49.932 | 54.381 | 46.336 | 44.857 | 49.888 | 49.646 | 48.214 | 39.950 | 31.241 | 49.949 | 47.895 | 51.573 | 40.688 | 33.411 |
| Â | Â | 136 (N) | G/G | 54.087 | 55.135 | 60.917 | 50.949 | 48.473 | 53.846 | 54.736 | 53.752 | 42.753 | 35.923 | 53.544 | 54.910 | 55.529 | 44.941 | 36.676 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.000 | 0.000 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
AX-110121838 | 549,336,395 | 191 (Ma) | A/A | 50.857 | 50.409 | 54.539 | 46.159 | 44.870 | 50.307 | 49.808 | 48.815 | 40.202 | 31.528 | 50.410 | 48.584 | 51.558 | 40.976 | 33.728 | |
| Â | Â | 169 (N) | G/G | 52.883 | 54.064 | 59.530 | 50.411 | 47.616 | 52.691 | 53.879 | 52.474 | 42.212 | 35.045 | 52.444 | 53.088 | 54.619 | 43.860 | 36.067 | |
| Â | Â | Â | P value | 0.003 | 0.000 | 0.000 | 0.000 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.004 | 0.000 | 0.001 | 0.000 | 0.001 | |
AX-111102726 | 572,237,027 | C/C (Ma) | 321 | 52.472 | 52.902 | 58.148 | 49.000 | 47.310 | 52.064 | 52.783 | 51.535 | 41.388 | 33.705 | 52.128 | 51.760 | 54.229 | 42.755 | 35.367 | |
| Â | Â | T/T (N) | 51 | 48.441 | 47.278 | 50.600 | 42.918 | 41.280 | 47.889 | 45.638 | 44.843 | 38.883 | 29.943 | 47.629 | 45.035 | 47.602 | 40.180 | 31.614 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | |
AX-109876198 | 572,814,730 | C/C (Ma) | 319 | 52.356 | 52.808 | 57.938 | 48.957 | 47.182 | 51.947 | 52.707 | 51.497 | 41.420 | 33.606 | 52.007 | 51.693 | 54.175 | 42.690 | 35.307 | |
| Â | Â | A/A (N) | 52 | 48.281 | 47.134 | 50.451 | 42.701 | 41.549 | 47.678 | 45.513 | 44.037 | 38.792 | 29.625 | 47.344 | 45.060 | 47.470 | 40.196 | 31.472 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | |
Qkns.his-4A | AX-109332913 | 701,527,878 | A/A (Ma) | 308 | 51.574 | 51.725 | 56.439 | 47.916 | 46.131 | 51.055 | 51.173 | 50.160 | 41.064 | 32.767 | 51.066 | 50.588 | 53.144 | 42.102 | 34.554 |
| Â | Â | G/G (N) | 61 | 53.277 | 53.520 | 58.883 | 49.213 | 48.633 | 53.648 | 54.304 | 51.875 | 41.384 | 34.781 | 53.028 | 51.949 | 53.689 | 43.799 | 36.126 | |
| Â | Â | Â | P value | 0.037 | 0.068 | 0.060 | 0.133 | 0.090 | 0.001 | 0.002 | 0.091 | 0.328 | 0.010 | 0.028 | 0.139 | 0.332 | 0.018 | 0.067 | |
AX-111508583 | 684,899,178 | C/C (Ma) | 162 | 51.999 | 52.155 | 58.099 | 48.859 | 46.272 | 52.193 | 52.416 | 51.069 | 40.895 | 33.222 | 52.154 | 50.831 | 54.176 | 42.496 | 35.388 | |
| Â | Â | A/A (N) | 186 | 51.501 | 51.367 | 55.978 | 47.298 | 46.124 | 50.748 | 50.831 | 49.772 | 41.073 | 33.099 | 50.610 | 50.706 | 52.342 | 42.305 | 34.286 | |
| Â | Â | Â | P value | 0.249 | 0.193 | 0.039 | 0.039 | 0.459 | 0.017 | 0.030 | 0.099 | 0.373 | 0.429 | 0.024 | 0.448 | 0.027 | 0.379 | 0.083 | |
Qsl.his-4A-1 | AX-108955453 | 36,102,562 | G/G (M) | 71 | 8.514 | 9.314 | 9.246 | 9.510 | 8.228 | 8.213 | 9.538 | 8.994 | 9.276 | 7.425 | 8.710 | 9.404 | 8.910 | 8.407 | 8.031 |
| Â | Â | A/A (Na) | 299 | 9.300 | 10.121 | 9.471 | 10.173 | 8.855 | 8.796 | 10.157 | 9.210 | 9.544 | 7.977 | 9.226 | 10.125 | 9.126 | 8.943 | 8.457 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.167 | 0.000 | 0.001 | 0.001 | 0.001 | 0.202 | 0.017 | 0.000 | 0.012 | 0.000 | 0.162 | 0.001 | 0.000 | |
Qsl.his-5D1 | AX-110409786 | 446,797,256 | C/C (M) | 229 | 8.907 | 9.833 | 9.388 | 9.852 | 8.611 | 8.544 | 9.891 | 9.150 | 9.388 | 7.709 | 8.942 | 9.803 | 8.996 | 8.728 | 8.287 |
| Â | Â | A/A (Na) | 134 | 9.572 | 10.152 | 9.541 | 10.328 | 8.925 | 8.909 | 10.250 | 9.202 | 9.651 | 8.118 | 9.403 | 10.270 | 9.246 | 8.988 | 8.495 | |
| Â | Â | Â | P value | 0.000 | 0.018 | 0.211 | 0.002 | 0.029 | 0.009 | 0.014 | 0.404 | 0.006 | 0.001 | 0.007 | 0.002 | 0.082 | 0.037 | 0.024 | |
Qsl.his-4D2–2 | AX-109924587 | 168,781,777 | A/A (M) | 116 | 8.752 | 9.699 | 9.135 | 9.559 | 8.317 | 8.458 | 9.726 | 8.869 | 9.310 | 7.524 | 8.671 | 9.539 | 8.788 | 8.534 | 8.187 |
| Â | Â | G/G (Na) | 245 | 9.304 | 10.055 | 9.545 | 10.240 | 8.889 | 8.772 | 10.145 | 9.273 | 9.572 | 8.021 | 9.314 | 10.174 | 9.204 | 8.965 | 8.469 | |
| Â | Â | Â | P value | 0.001 | 0.012 | 0.019 | 0.000 | 0.001 | 0.025 | 0.007 | 0.030 | 0.008 | 0.000 | 0.000 | 0.000 | 0.012 | 0.002 | 0.004 | |
Qsl.his-5B | AX-108886889 | 490,878,581 | C/C (M) | 94 | 8.731 | 9.557 | 9.378 | 9.636 | 8.384 | 8.538 | 9.718 | 9.195 | 9.293 | 7.456 | 8.951 | 9.688 | 9.108 | 8.617 | 8.197 |
| Â | Â | T/T (Na) | 265 | 9.285 | 10.103 | 9.427 | 10.160 | 8.867 | 8.728 | 10.142 | 9.158 | 9.564 | 8.011 | 9.151 | 10.093 | 9.077 | 8.903 | 8.453 | |
| Â | Â | Â | P value | 0.001 | 0.001 | 0.406 | 0.002 | 0.003 | 0.132 | 0.010 | 0.435 | 0.009 | 0.000 | 0.165 | 0.011 | 0.437 | 0.038 | 0.013 | |
Qsl.his-5A-2 | AX-109622137 | 506,645,437 | 198 (Ma) | T/T | 9.241 | 10.152 | 9.689 | 10.082 | 8.927 | 8.823 | 10.221 | 9.466 | 9.578 | 7.942 | 9.236 | 10.156 | 9.307 | 8.981 | 8.353 |
| Â | Â | 175 (N) | G/G | 8.961 | 9.653 | 9.074 | 9.895 | 8.501 | 8.451 | 9.736 | 8.765 | 9.344 | 7.711 | 8.941 | 9.723 | 8.791 | 8.619 | 8.371 | |
| Â | Â | Â | P value | 0.033 | 0.000 | 0.000 | 0.107 | 0.004 | 0.003 | 0.001 | 0.000 | 0.007 | 0.023 | 0.046 | 0.002 | 0.001 | 0.004 | 0.428 | |
AX-110199675 | 511,102,792 | C/C (Ma) | 142 | 9.346 | 10.339 | 9.829 | 10.254 | 9.032 | 8.949 | 10.355 | 9.619 | 9.645 | 8.065 | 9.376 | 10.321 | 9.454 | 9.134 | 8.443 | |
| Â | Â | T/T (N) | 213 | 8.992 | 9.695 | 9.173 | 9.866 | 8.546 | 8.510 | 9.786 | 8.894 | 9.378 | 7.742 | 8.959 | 9.753 | 8.846 | 8.649 | 8.349 | |
| Â | Â | Â | P value | 0.016 | 0.000 | 0.000 | 0.009 | 0.002 | 0.002 | 0.000 | 0.000 | 0.006 | 0.006 | 0.014 | 0.000 | 0.000 | 0.000 | 0.184 | |
QSl.his-3A-2 | AX-111618763 | 599,422,098 | T/T (Ma) | 227 | 8.965 | 9.778 | 9.329 | 9.896 | 8.630 | 8.601 | 9.882 | 9.140 | 9.406 | 7.711 | 9.000 | 9.833 | 9.028 | 8.759 | 8.255 |
| Â | Â | C/C (N) | 140 | 9.354 | 10.213 | 9.601 | 10.203 | 8.895 | 8.764 | 10.207 | 9.186 | 9.601 | 8.088 | 9.267 | 10.196 | 9.165 | 8.934 | 8.579 | |
| Â | Â | Â | P value | 0.009 | 0.002 | 0.077 | 0.029 | 0.057 | 0.145 | 0.024 | 0.413 | 0.031 | 0.002 | 0.078 | 0.012 | 0.223 | 0.115 | 0.001 | |
QSl.his-3B | AX-110931375 | 47,609,806 | A/A (Ma) | 322 | 9.030 | 9.856 | 9.435 | 9.974 | 8.663 | 8.607 | 9.915 | 9.122 | 9.468 | 7.784 | 9.080 | 9.887 | 9.048 | 8.754 | 8.333 |
| Â | Â | G/G (N) | 43 | 9.895 | 10.705 | 9.563 | 10.560 | 9.214 | 9.257 | 10.892 | 9.500 | 9.739 | 8.489 | 9.584 | 10.780 | 9.378 | 9.449 | 8.656 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.328 | 0.009 | 0.013 | 0.002 | 0.000 | 0.115 | 0.042 | 0.000 | 0.038 | 0.000 | 0.110 | 0.001 | 0.016 | |
QSl.his-2D1–1 | AX-110332825 | 15,841,686 | T/T (Ma) | 278 | 8.924 | 9.771 | 9.284 | 9.857 | 8.587 | 8.473 | 9.847 | 8.948 | 9.377 | 7.735 | 8.928 | 9.788 | 8.908 | 8.664 | 8.295 |
| Â | Â | C/C (N) | 85 | 9.693 | 10.458 | 9.838 | 10.428 | 9.080 | 9.302 | 10.507 | 9.788 | 9.827 | 8.271 | 9.718 | 10.522 | 9.501 | 9.327 | 8.569 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.005 | 0.001 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.009 | |
AX-108836084 | 17,230,342 | G/G (Ma) | 281 | 8.915 | 9.767 | 9.267 | 9.856 | 8.608 | 8.462 | 9.830 | 8.966 | 9.369 | 7.719 | 8.902 | 9.798 | 8.915 | 8.679 | 8.268 | |
| Â | Â | A/A (N) | 88 | 9.817 | 10.510 | 9.845 | 10.478 | 9.120 | 9.338 | 10.586 | 9.766 | 9.893 | 8.280 | 9.672 | 10.539 | 9.547 | 9.278 | 8.636 | |
| Â | Â | Â | P value | 0.000 | 0.000 | 0.003 | 0.000 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.001 |