Table 1 Summary of R108 genome assembly and annotation
Categories | Type | Length (bp) | No | % of genome |
|---|---|---|---|---|
Assembly [33] | Contigs | 399,348,944 | 1,005 | - |
Contig N50 | 5,925,378 | 18 | - | |
Non-coding RNAs | miRNA | 44,593 | 394 | 0.011 |
snRNA | 132,508 | 1,163 | 0.033 | |
rRNA | 379,649 | 1,298 | 0.094 | |
tRNA | 87,387 | 1,162 | 0.022 | |
Transposable elements | DNA | 49,303,718 | - | 12.26 |
LINE | 22,617,452 | - | 5.62 | |
SINE | 4,771,852 | - | 1.19 | |
LTR | 75,958,551 | - | 18.89 | |
RC | 9,565,763 | - | 2.38 | |
Satellite | 3,054,872 | - | 0.76 | |
Simple_Repeat | 7,944,656 | - | 1.98 | |
Unknown | 42,481,132 | - | 10.56 | |
Low_Complexity | 3,896,467 | - | 0.97 | |
Total | 187,714,868 | - | 46.68 | |
Gene | Gene loci | - | 42,066 | - |
Average gene length (bp) | 2,451 | - | - | |
Average CDS length (bp) | 1,070 | - | - | |
Average exon length (bp) | 252.40 | - | - | |
Average exons per gene | - | 4.24 | - | |
Average intron length | 426.58 | - | - |