Table 2 The candidate genes of significantly associated regions for multiple berry shape traits

Fruit Shape Index External II, Fruit Shape Index Internal

VIT_03s0097g00140

3:9892772–9,893,537

PREDICTED: Vitis vinifera L-type lectin-domain containing receptor kinase IX.1 (LOC100265547), mRNA

VIT_04s0023g01970

4:18530909–18,534,706

PREDICTED: Vitis vinifera putative glucose-6-phosphate 1-epimerase (LOC100266694), mRNA

VIT_06s0004g00020

6:95994–97,288

PREDICTED: Vitis vinifera NAC domain-containing protein 68 (LOC100263939), mRNA

VIT_06s0004g01280

6:1524152–1,537,550

PREDICTED: GATA transcription factor 23-like [Vitis vinifera]

VIT_07s0005g04080

7:7175304–7,176,037

PREDICTED: Vitis vinifera MDIS1-interacting receptor like kinase 2-like (LOC100246300), mRNA

VIT_07s0005g04100

7:7199256–7,202,858

PREDICTED: Vitis vinifera MDIS1-interacting receptor like kinase 2-like (LOC100266867), mRNA

VIT_08s0007g00290

8:14603038–14,609,600

PREDICTED: Vitis vinifera pectin acetylesterase 5 (LOC100244164), transcript variant X1, mRNA

VIT_08s0007g00440

8:14732840–14,734,936

PREDICTED: Vitis vinifera expansin-A6 (LOC100245911), mRNA

VIT_09s0002g03020

9:2728009–2,740,198

PREDICTED: Vitis vinifera putative leucine-rich repeat receptor-like protein kinase At2g19210 (LOC100266874), mRNA

VIT_09s0002g03030

9:2778212–2,782,247

PREDICTED: Vitis vinifera probable LRR receptor-like serine/threonine-protein kinase At1g05700 (LOC100251452), mRNA

VIT_09s0070g00850

9:14657091–14,663,881

PREDICTED: Vitis vinifera probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC104878156), transcript variant X1, mRNA

VIT_10s0092g00200

10:11506152–11,510,357

PREDICTED: GDP-mannose transporter GONST3 [Vitis vinifera]

VIT_12s0134g00230

12:7753336–7,755,364

PREDICTED: Vitis vinifera indole-3-acetic acid-amido synthetase GH3.6 (LOC100255170), mRNA

VIT_12s0134g00240

12:7768803–7,769,369

PREDICTED: Vitis vinifera calcium-binding protein PBP1 (LOC100265313), mRNA

VIT_16s0022g02330

16:14940190–14,955,349

PREDICTED: Vitis vinifera MADS-box transcription factor 6 (LOC100256085), transcript variant X1, mRNA

VIT_19s0014g00550

19:560043–564,043

PREDICTED: Vitis vinifera TOM1-like protein 2 (LOC100264036), transcript variant X1, mRNA

VIT_19s0014g00560

19:572717–579,014

PREDICTED: Vitis vinifera probable arabinosyltransferase ARAD1 (LOC100241759), transcript variant X2, mRNA

Curved Fruit Shape Index, Fruit Shape Index External II, Fruit Shape Index Internal

VIT_07s0005g04110

7:7204959–7,209,235

PREDICTED: Vitis vinifera cellulose synthase A catalytic subunit 4 [UDP-forming] (LOC100241197), mRNA

Fruit Shape Index External I, Fruit Shape Index External II, Fruit Shape Index Internal

VIT_02s0025g01360

2:1274105–1,275,209

PREDICTED: ethylene-responsive transcription factor ERF061 [Vitis vinifera]

VIT_07s0005g02370

7:4729295–4,730,035

PREDICTED: Vitis vinifera germin-like protein 5–1 (LOC100260641), mRNA

VIT_07s0005g02380

7:4743365–4,744,223

PREDICTED: Vitis vinifera germin-like protein subfamily 2 member 4 (LOC100267594), mRNA

VIT_09s0002g08430

9:9424676–9,434,529

PREDICTED: Vitis vinifera protein NUCLEAR FUSION DEFECTIVE 4 (LOC100262975), mRNA

VIT_09s0096g00850

9:12518294–12,520,356

PREDICTED: Vitis vinifera probable polygalacturonase At3g15720 (LOC100251699), mRNA

VIT_09s0070g00140

9:13115563–13,117,457

PREDICTED: Vitis vinifera CBL-interacting serine/threonine-protein kinase 5 (LOC100255067), mRNA

VIT_09s0018g02060

9:19788292–19,790,440

PREDICTED: Vitis vinifera sugar transport protein 8 (HT14), mRNA

VIT_10s0003g04300

10:7394269–7,397,548

PREDICTED: Vitis vinifera F-box protein SKIP19 (LOC100265193), transcript variant X1, mRNA

VIT_10s0116g00680

10:300617–304,777

PREDICTED: Vitis vinifera homeobox-leucine zipper protein MERISTEM L1 (LOC100264009), mRNA

VIT_12s0057g00880

12:9587450–9,598,955

PREDICTED: transcription initiation factor TFIID subunit 15b [Vitis vinifera]

VIT_13s0019g05160

13:6937392–6,997,802

PREDICTED: Vitis vinifera pullulanase 1, chloroplastic (LOC100247866), transcript variant X1, mRNA

VIT_18s0076g00330

18:16209694–16,218,061

PREDICTED: Vitis vinifera transcription factor VIP1 (LOC100241011), mRNA

Curved Fruit Shape Index, Fruit Shape Index External I, Fruit Shape Index External II, Fruit Shape Index Internal

VIT_16s0013g00860

16:6368533–6,436,142

PREDICTED: Vitis vinifera polycomb group protein EMBRYONIC FLOWER 2 (LOC100252876), transcript variant X1, mRNA

VIT_09s0002g08370

9:9246440–9,256,248

PREDICTED: Vitis vinifera protein TOPLESS (LOC100248092), mRNA

VIT_13s0064g00360

13:21879764–21,898,935

PREDICTED: Vitis vinifera notchless protein homolog (LOC100262007), transcript variant X1, mRNA

VIT_03s0088g01090

3:9340156–9,341,562

PREDICTED: Vitis vinifera RING finger protein 44 (LOC104878839), mRNA