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Table 2 The candidate genes of significantly associated regions for multiple berry shape traits

From: Genome-wide association study of the candidate genes for grape berry shape-related traits

Berry shape traits Gene ID Location Nr annotation
Fruit Shape Index External II, Fruit Shape Index Internal VIT_03s0097g00140 3:9892772–9,893,537 PREDICTED: Vitis vinifera L-type lectin-domain containing receptor kinase IX.1 (LOC100265547), mRNA
VIT_04s0023g01970 4:18530909–18,534,706 PREDICTED: Vitis vinifera putative glucose-6-phosphate 1-epimerase (LOC100266694), mRNA
VIT_06s0004g00020 6:95994–97,288 PREDICTED: Vitis vinifera NAC domain-containing protein 68 (LOC100263939), mRNA
VIT_06s0004g01280 6:1524152–1,537,550 PREDICTED: GATA transcription factor 23-like [Vitis vinifera]
VIT_07s0005g04080 7:7175304–7,176,037 PREDICTED: Vitis vinifera MDIS1-interacting receptor like kinase 2-like (LOC100246300), mRNA
VIT_07s0005g04100 7:7199256–7,202,858 PREDICTED: Vitis vinifera MDIS1-interacting receptor like kinase 2-like (LOC100266867), mRNA
VIT_08s0007g00290 8:14603038–14,609,600 PREDICTED: Vitis vinifera pectin acetylesterase 5 (LOC100244164), transcript variant X1, mRNA
VIT_08s0007g00440 8:14732840–14,734,936 PREDICTED: Vitis vinifera expansin-A6 (LOC100245911), mRNA
VIT_09s0002g03020 9:2728009–2,740,198 PREDICTED: Vitis vinifera putative leucine-rich repeat receptor-like protein kinase At2g19210 (LOC100266874), mRNA
VIT_09s0002g03030 9:2778212–2,782,247 PREDICTED: Vitis vinifera probable LRR receptor-like serine/threonine-protein kinase At1g05700 (LOC100251452), mRNA
VIT_09s0070g00850 9:14657091–14,663,881 PREDICTED: Vitis vinifera probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC104878156), transcript variant X1, mRNA
VIT_10s0092g00200 10:11506152–11,510,357 PREDICTED: GDP-mannose transporter GONST3 [Vitis vinifera]
VIT_12s0134g00230 12:7753336–7,755,364 PREDICTED: Vitis vinifera indole-3-acetic acid-amido synthetase GH3.6 (LOC100255170), mRNA
VIT_12s0134g00240 12:7768803–7,769,369 PREDICTED: Vitis vinifera calcium-binding protein PBP1 (LOC100265313), mRNA
VIT_16s0022g02330 16:14940190–14,955,349 PREDICTED: Vitis vinifera MADS-box transcription factor 6 (LOC100256085), transcript variant X1, mRNA
VIT_19s0014g00550 19:560043–564,043 PREDICTED: Vitis vinifera TOM1-like protein 2 (LOC100264036), transcript variant X1, mRNA
VIT_19s0014g00560 19:572717–579,014 PREDICTED: Vitis vinifera probable arabinosyltransferase ARAD1 (LOC100241759), transcript variant X2, mRNA
Curved Fruit Shape Index, Fruit Shape Index External II, Fruit Shape Index Internal VIT_07s0005g04110 7:7204959–7,209,235 PREDICTED: Vitis vinifera cellulose synthase A catalytic subunit 4 [UDP-forming] (LOC100241197), mRNA
Fruit Shape Index External I, Fruit Shape Index External II, Fruit Shape Index Internal VIT_02s0025g01360 2:1274105–1,275,209 PREDICTED: ethylene-responsive transcription factor ERF061 [Vitis vinifera]
VIT_07s0005g02370 7:4729295–4,730,035 PREDICTED: Vitis vinifera germin-like protein 5–1 (LOC100260641), mRNA
VIT_07s0005g02380 7:4743365–4,744,223 PREDICTED: Vitis vinifera germin-like protein subfamily 2 member 4 (LOC100267594), mRNA
VIT_09s0002g08430 9:9424676–9,434,529 PREDICTED: Vitis vinifera protein NUCLEAR FUSION DEFECTIVE 4 (LOC100262975), mRNA
VIT_09s0096g00850 9:12518294–12,520,356 PREDICTED: Vitis vinifera probable polygalacturonase At3g15720 (LOC100251699), mRNA
VIT_09s0070g00140 9:13115563–13,117,457 PREDICTED: Vitis vinifera CBL-interacting serine/threonine-protein kinase 5 (LOC100255067), mRNA
VIT_09s0018g02060 9:19788292–19,790,440 PREDICTED: Vitis vinifera sugar transport protein 8 (HT14), mRNA
VIT_10s0003g04300 10:7394269–7,397,548 PREDICTED: Vitis vinifera F-box protein SKIP19 (LOC100265193), transcript variant X1, mRNA
VIT_10s0116g00680 10:300617–304,777 PREDICTED: Vitis vinifera homeobox-leucine zipper protein MERISTEM L1 (LOC100264009), mRNA
VIT_12s0057g00880 12:9587450–9,598,955 PREDICTED: transcription initiation factor TFIID subunit 15b [Vitis vinifera]
VIT_13s0019g05160 13:6937392–6,997,802 PREDICTED: Vitis vinifera pullulanase 1, chloroplastic (LOC100247866), transcript variant X1, mRNA
VIT_18s0076g00330 18:16209694–16,218,061 PREDICTED: Vitis vinifera transcription factor VIP1 (LOC100241011), mRNA
Curved Fruit Shape Index, Fruit Shape Index External I, Fruit Shape Index External II, Fruit Shape Index Internal VIT_16s0013g00860 16:6368533–6,436,142 PREDICTED: Vitis vinifera polycomb group protein EMBRYONIC FLOWER 2 (LOC100252876), transcript variant X1, mRNA
VIT_09s0002g08370 9:9246440–9,256,248 PREDICTED: Vitis vinifera protein TOPLESS (LOC100248092), mRNA
VIT_13s0064g00360 13:21879764–21,898,935 PREDICTED: Vitis vinifera notchless protein homolog (LOC100262007), transcript variant X1, mRNA
VIT_03s0088g01090 3:9340156–9,341,562 PREDICTED: Vitis vinifera RING finger protein 44 (LOC104878839), mRNA