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Table 1 Characteristics of 28 SSR loci in 121 Erianthus accessions collected in Thailand

From: Erianthus germplasm collection in Thailand: genetic structure and phylogenetic aspects of tetraploid and hexaploid accessions

Locus

Expected size (bp) b

Observed size range (bp)

Characteristics c

Name

Motif a

NA

NP

NG

PIC

MI

Rp

ED002

(CT)8

247

238–278

13

100.0

33

0.16

2.03

2.79

ED011

(AG)8

199

144–216

10

100.0

39

0.22

2.20

3.01

ED035 d

(AC)8

232

194–232

11

100.0

53

0.27

3.01

4.81

ED082

(AT)8

197

157–282

26

100.0

86

0.19

4.82

6.48

ED088

(AG)10

174

159–195

16

100.0

65

0.20

3.14

4.25

ED101

(GT)8

186

196–220

13

100.0

39

0.19

2.42

3.50

ED106

(CT)11

207

174–206

14

100.0

68

0.25

3.54

5.07

ED113

(AT)8

182

171–189

9

100.0

37

0.27

2.43

3.45

ED185

(AG)12

177

153–269

9

88.9

18

0.14

1.13

1.72

ED188

(GT)9

201

141–200

6

100.0

18

0.28

1.67

2.35

ED239

(CT)8

179

174–180

4

100.0

13

0.36

1.44

2.05

ED265

(GT)8

235

227–257

14

100.0

56

0.22

3.04

4.88

ED307

(GT)8

173

143–179

9

100.0

34

0.26

2.30

3.59

ED316

(GT)8

249

234–256

11

100.0

43

0.25

2.77

4.10

ETR044

(AGC)7

193

124–249

9

100.0

25

0.23

2.05

2.84

ETR047

(AGG)6

197

189–195

3

100.0

5

0.24

0.73

0.94

ETR074

(GGT)5

224

188–239

10

90.0

25

0.16

1.46

1.93

ETR077

(CCT)5

198

192–210

5

80.0

9

0.18

0.71

1.09

ETR083

(CTT)14

234

214–329

29

100.0

75

0.13

3.75

4.89

ETR097

(CCG)6

190

178–205

9

88.9

23

0.19

1.55

2.26

ETR098

(CTT)5

139

138

1

0.0

1

0.00

0.00

0.00

ETR104

(AGC)5

252

156–326

9

88.9

18

0.19

1.54

2.17

ETR107

(CCG)5

234

174–244

7

100.0

16

0.22

1.53

2.28

ETR124

(GAT)7

182

166–181

6

83.3

16

0.28

1.40

2.50

ETR129

(AAT)7

154

137–236

32

100.0

83

0.15

4.94

6.30

ETR154

(CCG)6

194

171–198

10

100.0

36

0.25

2.53

3.59

ETR169

(GTT)10

242

183–322

12

100.0

46

0.20

2.46

3.26

ETR172

(GCT)5

141

112–184

9

100.0

18

0.16

1.43

1.98

Maximum

32

100.0

86

0.36

4.94

6.48

Minimum

1

0.0

1

0.00

0.00

0.00

Mean (SD)

11.3 (7.2)

93.6 (19.2)

35.6 (23.5)

0.21 (0.07)

2.22 (1.15)

3.15 (1.55)

  1. a Motifs and numbers of repeat in E. arundinaceus accession ‘JW630’ used in SSR marker development
  2. b Size of PCR product in E. arundinaceus accession ‘JW630’ used in SSR marker development
  3. cNA, numbers of amplified fragments; NP, % of polymorphic fragments; NG, numbers of genotypes; PIC, polymorphic information content; MI, marker index; Rp, resolving power
  4. d Loci indicating high discriminatory power in all 121 accessions are shown in bold
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BMC Plant Biology

ISSN: 1471-2229

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