Genome-wide identification and expression analysis of the bZIP transcription factors, and functional analysis in response to drought and cold stresses in pear (Pyrus breschneideri)

Ma, Ming; Chen, Qiming; Dong, Huizhen; Zhang, Shaoling; Huang, Xiaosan

doi:10.1186/s12870-021-03356-0

Table 3 The duplicate mode and estimation of absolute date for large-scale duplication events for PbrbZIPs

From: Genome-wide identification and expression analysis of the bZIP transcription factors, and functional analysis in response to drought and cold stresses in pear (Pyrus breschneideri)

Method	Colinearity gene pairs		Duplication type		Ka	Ks	Ka/Ks	MYA
Method	Gene1	Gene2	Gene1	Gene2	Ka	Ks	Ka/Ks	MYA
NG	PbrbZIP51	PbrbZIP61	WGD	WGD	0.52	2	0.26	669.26
NG	PbrbZIP71	PbrbZIP48	WGD	WGD	0.08	0.11	0.72	37.1
NG	PbrbZIP71	PbrbZIP43	WGD	WGD	Na	Na	Na	Na
NG	PbrbZIP51	PbrbZIP33	WGD	WGD	0.56	2.83	0.2	947.37
NG	PbrbZIP51	PbrbZIP16	WGD	NA	0.07	0.23	0.29	78.55
NG	PbrbZIP50	PbrbZIP91	WGD	WGD	0	0.02	0.07	7.81
NG	PbrbZIP22	PbrbZIP10	WGD	WGD	0.46	1.74	0.26	581.6
NG	PbrbZIP22	PbrbZIP59	WGD	WGD	0.06	0.25	0.22	85.02
NG	PbrbZIP91	PbrbZIP64	WGD	WGD	0.05	0.14	0.35	47.99
NG	PbrbZIP82	PbrbZIP27	WGD	WGD	0.07	0.19	0.35	63.45
NG	PbrbZIP47	PbrbZIP74	WGD	WGD	0.09	0.23	0.38	78.38
NG	PbrbZIP50	PbrbZIP64	WGD	WGD	0.05	0.11	0.42	38.21
NG	PbrbZIP85	PbrbZIP77	WGD	WGD	0.34	Na	Na	Na
NG	PbrbZIP85	PbrbZIP53	WGD	WGD	0.35	Na	Na	Na
NG	PbrbZIP41	PbrbZIP30	WGD	WGD	0.05	0.22	0.24	74.34
NG	PbrbZIP76	PbrbZIP54	WGD	WGD	0.03	0.16	0.15	54.99
NG	PbrbZIP85	PbrbZIP62	WGD	WGD	0.03	0.24	0.14	80.94
NG	PbrbZIP83	PbrbZIP08	WGD	WGD	0.03	0.16	0.22	53.83
NG	PbrbZIP83	PbrbZIP35	WGD	WGD	0.04	0.15	0.24	50.18
NG	PbrbZIP41	PbrbZIP05	WGD	WGD	0.25	1.55	0.16	519.43
NG	PbrbZIP42	PbrbZIP19	WGD	WGD	0.05	0.16	0.3	53.19
NG	PbrbZIP10	PbrbZIP59	WGD	WGD	0.5	1.61	0.31	539.82
NG	PbrbZIP73	PbrbZIP17	WGD	WGD	0.64	2.57	0.25	859.53
NG	PbrbZIP73	PbrbZIP39	WGD	WGD	0.34	1.55	0.22	518.94
NG	PbrbZIP79	PbrbZIP57	WGD	WGD	0.12	0.19	0.64	62.31
NG	PbrbZIP65	PbrbZIP32	WGD	WGD	0.06	0.25	0.23	82.12
NG	PbrbZIP73	PbrbZIP31	WGD	WGD	0.05	0.26	0.19	88.16
NG	PbrbZIP73	PbrbZIP49	WGD	WGD	0.57	1.76	0.33	588.3
NG	PbrbZIP73	PbrbZIP52	WGD	WGD	0.36	1.42	0.25	476.29
NG	PbrbZIP17	PbrbZIP39	WGD	WGD	0.62	Na	Na	Na
NG	PbrbZIP19	PbrbZIP07	WGD	WGD	0.5	Na	Na	Na
NG	PbrbZIP17	PbrbZIP49	WGD	WGD	0.15	0.3	0.49	98.8
NG	PbrbZIP61	PbrbZIP33	WGD	WGD	0.11	0.21	0.52	71.39
NG	PbrbZIP17	PbrbZIP52	WGD	WGD	0.6	2.47	0.25	824.95
NG	PbrbZIP04	PbrbZIP66	WGD	WGD	0.01	0.01	0.9	3
NG	PbrbZIP48	PbrbZIP43	WGD	WGD	0.08	0.11	0.72	37.1
NG	PbrbZIP77	PbrbZIP53	WGD	WGD	0.1	0.31	0.34	102.63
NG	PbrbZIP78	PbrbZIP01	WGD	WGD	0.08	0.2	0.38	67.79
NG	PbrbZIP48	PbrbZIP01	WGD	WGD	0.61	1.14	0.54	381
NG	PbrbZIP15	PbrbZIP89	WGD	WGD	0.27	1.57	0.17	524.43
NG	PbrbZIP13	PbrbZIP67	WGD	WGD	0.03	0.2	0.13	66.97
NG	PbrbZIP23	PbrbZIP46	WGD	WGD	0.09	0.23	0.38	77.05
NG	PbrbZIP40	PbrbZIP72	WGD	WGD	0.03	0.19	0.17	62.26
NG	PbrbZIP13	PbrbZIP11	WGD	NA	0.07	0.31	0.23	102.58
NG	PbrbZIP84	PbrbZIP38	WGD	WGD	0.04	0.16	0.21	55.06
NG	PbrbZIP39	PbrbZIP31	WGD	WGD	0.31	1.44	0.22	481.17
NG	PbrbZIP39	PbrbZIP49	WGD	WGD	0.52	Na	Na	Na
NG	PbrbZIP39	PbrbZIP52	WGD	WGD	0.06	0.2	0.29	66.62
NG	PbrbZIP37	PbrbZIP90	WGD	WGD	0.01	0.14	0.09	45.83
NG	PbrbZIP56	PbrbZIP25	WGD	WGD	0.1	0.24	0.42	81.4
NG	PbrbZIP55	PbrbZIP24	WGD	WGD	0.05	0.21	0.26	69.07
NG	PbrbZIP58	PbrbZIP26	dispersed	NA	0.04	0.14	0.27	47.62
NG	PbrbZIP08	PbrbZIP35	WGD	WGD	0	0.01	0.2	2.81
NG	PbrbZIP07	PbrbZIP34	WGD	WGD	0.01	0.01	1.09	3.77
NG	PbrbZIP30	PbrbZIP05	WGD	WGD	0.26	1.74	0.15	581.11
NG	PbrbZIP31	PbrbZIP52	WGD	WGD	0.34	1.35	0.25	450.63
NG	PbrbZIP49	PbrbZIP52	WGD	WGD	0.58	Na	Na	Na
NG	PbrbZIP05	PbrbZIP06	WGD	WGD	Na	Na	Na	Na
NG	PbrbZIP06	PbrbZIP09	WGD	NA	0.02	0.15	0.11	48.73
NG	PbrbZIP05	PbrbZIP09	WGD	WGD	0.02	0.15	0.11	48.73
NG	PbrbZIP67	PbrbZIP11	WGD	WGD	0.06	0.34	0.19	114.28
NG	PbrbZIP60	PbrbZIP86	dispersed	NA	0.03	0.08	0.36	26.09
NG	PbrbZIP86	PbrbZIP87	WGD	NA	Na	Na	Na	Na

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ISSN: 1471-2229

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