Table 1 Promoter cis-elements prediction
Element | Sequence | Position | Function |
|---|---|---|---|
A-box | CCGTCC | − 912 to − 907 | cis-acting regulatory element |
ABRE | ACGTG | − 2726 to − 2722 | ABA-responsive element |
ATCT-motif | AATCTAATCC | − 3154 to − 3144 | part of a conserved DNA module involved in light-responsiveness |
ARR | CAAATCT | − 447 to − 441 | ARR motif |
Box II | ACACGTAGA | − 1882 to − 1874 | part of a light-responsive element |
Box 4 | ATTAAT | − 216 to − 211 | light-responsive element |
CAAT-box | CAAT | −98 to − 95 | common cis-acting element in promoter and enhancer regions |
CAT-box | GCCACT | − 935 to − 930 | cis-acting regulatory element related to meristem expression |
CGTCA-motif | CGTCA | − 1587 to − 1583 | cis-acting regulatory element involved in the MeJA-responsiveness |
G-box | CACGTG | − 1513 to − 1508 | cis-acting regulatory element involved in light-responsiveness |
GATA-motif | GATAGGA | − 198 to − 192 | part of a light-responsive element |
GC-motif | CCCCCG | − 1107 to − 1102 | enhancer-like element involved in anoxic specific inducibility |
GCC-box | CCGCCGTC | − 376 to − 369 | ethylene-responsive element |
GCN4_motif | TGAGTCA | − 821 to − 815 | cis-regulatory element involved in endosperm expression |
GT1-motif | GGTTAA | − 507 to − 502 | light-responsive element |
HSE | AGAANNTTCT | − 2869 to − 2861 | HSF element |
LAMP-element | CTTTATCA | − 2467 to − 2460 | part of a light-responsive element |
LTR | CCGAAA | − 792 to − 787 | cis-acting element involved in low-temperature responsiveness |
MBS | CAACTG | − 3091 to − 3086 | MYB binding site involved in drought-inducibility |
Myb | CAACTG | − 470 to − 465 | Myb motif |
MYC | CATGTG | − 2540 to − 2539 | MYC element |
P-box | CCTTTTG | − 3005 to − 2999 | gibberellin-responsive element |
Sp1 | GGGCGG | − 1673 to − 1668 | light-responsive element |
TATA-box | TATA | −30 to −27 | core promoter element around − 30 of transcription start |
TCA-element | CCATCTTTTT | − 1896 to − 1887 | cis-acting element involved in salicylic acid responsiveness |
TCCC-motif | TCTCCCT | − 1116 to − 1110 | part of a light-responsive element |
TGA-element | AACGAC | − 1818 to − 1813 | auxin-responsive element |
TGACG-motif | TGACG | −1587 to −1583 | cis-acting regulatory element involved in the MeJA-responsiveness |
W box | TTGACC | − 2561 to − 2556 | WRKY motif |