Table 1 Characteristic of JrLACs family genes from walnut (J. regia L.)
From: The role of JrLACs in the lignification of walnut endocarp
Name | Locus ID | Gene Length (bp) | Chromosomes | Exon | Intron | NCBI Reference | CDS (bp) | Amino acid length (aa) | PI | MW (Kd) |
|---|---|---|---|---|---|---|---|---|---|---|
JrLAC1 | 108984288 | 3155 | Chr 6 | 5 | 4 | XM_035690758.1 | 1749 | 582 | 7.08 | 65.56 |
JrLAC2–1 | 108983777 | 3046 | Chr 5 | 6 | 5 | XM_018955536.2 | 1752 | 583 | 9.46 | 64.34 |
JrLAC2–2 | 108990223 | 2839 | Chr 4 | 6 | 5 | XM_018964112.2 | 1812 | 603 | 9.90 | 66.96 |
JrLAC2–3 | 109013004 | 2959 | Chr 14 | 6 | 5 | XM_035685151.1 | 1770 | 589 | 9.79 | 65.37 |
JrLAC4–1 | 108994849 | 2901 | Chr 3 | 6 | 5 | XM_018970242.2 | 1674 | 557 | 9.37 | 60.93 |
JrLAC4–2 | 108994944 | 3025 | Chr 3 | 6 | 5 | XM_018970384.2 | 1671 | 556 | 9.60 | 61.01 |
JrLAC4–3 | 109000806 | 2976 | Chr 4 | 6 | 5 | XM_018977812.2 | 1674 | 557 | 9.23 | 61.03 |
JrLAC4–4 | 109021622 | 3890 | Chr 3 | 6 | 5 | XM_019004281.2 | 1677 | 558 | 8.62 | 60.86 |
JrLAC4–5 | 109012365 | 3736 | Chr 14 | 6 | 5 | XM_035685124.1 | 1683 | 560 | 9.49 | 61.56 |
JrLAC6 | 108989255 | 3022 | Chr 7 | 6 | 5 | XM_018962803.2 | 1719 | 572 | 6.78 | 63.74 |
JrLAC7–1 | 108984801 | 3341 | Chr 3 | 6 | 5 | XM_018956860.2 | 1719 | 572 | 6.19 | 62.82 |
JrLAC7–2 | 109002960 | 3315 | Chr 3 | 6 | 5 | XM_035688863.1 | 1710 | 569 | 6.37 | 62.82 |
JrLAC9–1 | 108981170 | 3632 | Chr 15 | 7 | 6 | XM_018952257.2 | 1848 | 615 | 4.80 | 68.40 |
JrLAC9–2 | 109013371 | 4275 | Chr 6 | 7 | 6 | XM_018995434.2 | 1773 | 590 | 4.70 | 66.64 |
JrLAC9–3 | 109011443 | 4877 | Chr 6 | 7 | 6 | XM_018992655.2 | 1764 | 587 | 4.67 | 65.80 |
JrLAC9–4 | 109016897 | 4352 | Chr 6 | 7 | 6 | XM_035691226.1 | 1707 | 568 | 5.04 | 63.06 |
JrLAC11–1 | 108997567 | 2848 | Chr 12 | 6 | 5 | XM_018973904.2 | 1680 | 559 | 8.51 | 61.91 |
JrLAC11–2 | 109013800 | 2488 | Chr 13 | 6 | 5 | XM_018996016.2 | 1692 | 563 | 8.70 | 62.67 |
JrLAC12–1 | 108991934 | 3981 | Chr 7 | 6 | 5 | XM_018966361.2 | 1743 | 580 | 7.60 | 63.77 |
JrLAC12–2 | 109004750 | 3113 | Chr 12 | 6 | 5 | XM_018983416.2 | 1743 | 580 | 8.96 | 63.70 |
JrLAC13 | 108996980 | 2749 | Chr 14 | 6 | 5 | XM_018973047.2 | 1728 | 575 | 8.27 | 63.43 |
JrLAC14–1 | 108983274 | 3541 | Chr 6 | 7 | 6 | XM_018954858.2 | 1722 | 573 | 8.62 | 63.56 |
JrLAC14–2 | 108985628 | 4451 | Chr 6 | 7 | 6 | XM_018957991.2 | 1701 | 566 | 7.24 | 62.70 |
JrLAC14–3 | 108985630 | 3993 | Chr 6 | 7 | 6 | XM_035691062.1 | 1716 | 571 | 5.84 | 63.26 |
JrLAC14–4 | 108991517 | 3831 | Chr 6 | 7 | 6 | XM_035691227.1 | 1689 | 562 | 5.13 | 62.27 |
JrLAC14–5 | 118348788 | 3844 | Chr 6 | 7 | 6 | XM_035691296.1 | 1710 | 569 | 8.23 | 63.19 |
JrLAC14–6 | 109008603 | 3096 | Chr 6 | 7 | 6 | XM_018988767.2 | 1704 | 567 | 8.57 | 62.84 |
JrLAC14–7 | 109013368 | 3557 | Chr 6 | 7 | 6 | XM_018995430.2 | 1758 | 585 | 4.99 | 65.53 |
JrLAC14–8 | 109013369 | 3789 | Chr 6 | 7 | 6 | XM_018995431.2 | 1785 | 594 | 5.12 | 66.36 |
JrLAC15–1 | 109002896 | 4785 | Chr 6 | 7 | 6 | XM_018980818.2 | 1785 | 594 | 5.39 | 66.82 |
JrLAC15–2 | 109014678 | 3513 | Chr 6 | 6 | 5 | XM_018997175.2 | 1743 | 580 | 6.90 | 64.68 |
JrLAC15–3 | 109013370 | 3947 | Chr 6 | 7 | 6 | XM_018995432.2 | 1782 | 593 | 5.33 | 66.41 |
JrLAC16 | 109002717 | 4202 | Chr 12 | 6 | 5 | XM_035683175.1 | 1668 | 555 | 8. 80 | 61.21 |
JrLAC17–1 | 108979069 | 3052 | Chr 5 | 6 | 5 | XM_018949655.2 | 1749 | 582 | 9.02 | 64.36 |
JrLAC17–2 | 108979942 | 2777 | Chr 3 | 6 | 5 | XM_018950745.2 | 1773 | 590 | 9.23 | 64.83 |
JrLAC17–3 | 108989607 | 3368 | Chr 14 | 6 | 5 | XM_018963281.2 | 1758 | 585 | 9.00 | 64.46 |
JrLAC17–4 | 109009009 | 3406 | Chr 14 | 6 | 5 | XM_018989328.2 | 1764 | 587 | 8.74 | 64.99 |