Table 7 List of genes underlying genomic regions identified in both GLM and MLM approaches with association analysis in diverse panel II
From: Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces
Marker | Chr. | Physical position (Mb) a | Traits associated | Genes within confidence interval a | |
|---|---|---|---|---|---|
GLM | MLM | ||||
RM259 | 1 | 7446642–7446813 | Chl | Chl | Phosphatidylinositol 3- and 4-kinase family protein (LOC_Os01g13360) |
RM1032 | 1 | 9318464–9318612 | PH, RL | PH, RL | NB-ARC domain (LOC_Os01g16400) Actin (LOC_Os01g16414) |
RM246 | 1 | 27336221–27336333 | SPAD | RV | CS domain containing protein (LOC_ Os01g47770) |
RM1178 | 2 | 14020245–14020356 | RV, SDW, CT | RV, SDW, SPAD | Expressed protein (LOC_Os02g24205) |
RM5633 | 4 | 13084092–13084302 | RL, RV | SPAD, Chl, SLA | Retrotransposon protein (LOC_Os04g23030) Expressed protein (LOC_Os04g23040) |
RM1048 | 7 | 20165312–20165449 | RL, CT | RL | NB-ARC domain (LOC_Os07g33730 |
RM1019 | 8 | 202331–202477 | RL, SPAD, Chl | RL, CID | Broad Complex BTB domain (LOC_Os08g01320) |
RM1026 | 9 | 22605659–22605822 | RL, RV, Chl | Chl | CTR1-like protein kinase (LOC_Os09g39320) |
RM5961 | 11 | 19926656–19926784 | Chl | PH, CID, SLA | Hypothetical protein (LOC_Os11g34070) |
RM5715 | 12 | 25034080–25034280 | RV, RL, Chl | RV | Biotin--protein ligase (LOC_Os12g40450) C3HC4 type domain protein (LOC_Os12g40460) |