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Table 2 Distribution of pleiotropic loci associated with two or more grain architecture related traits

From: Genetic dissection of grain architecture-related traits in a winter wheat population

Chr Marker Trait/Effect/−log10(p-value) Marker Position (bp) and alelles Candidate gene-Genomic location Annotation
1B wsnp_Ex_c1600_3051075 (IWA2084) TKW (+ 1.611) 4.20
KA (+ 0.134) 5.66
524,154,547–524,154,747
T-G
TraesCS1B01G303200
(524153507–524,155,132)
Protein of unknown function DUF1677, O. sativa
2A Excalibur_c12169_1088
(IWB22047)
TKW (+ 2.176) 6.91
KA (+ 0.576) 5.76
82,350,252–82,350,352
A-G
TraesCS2A01G136800
(82349905–82,354,821)
Heat shock protein binding (Gos)
Heat shock protein DnaJ, cysteine-rich domain (interpros)
5B RAC875_c9150_2945 (IWB61034) KA (− 0.318) 5.23
KL (− 0.110) 4.20
459,477,406–459,477,506
C-T
TraesCS5B01G274000
(459476178–459,493,013)
P-loop containing nucleoside triphosphate hydrolase (interpros)
6A BobWhite_c5872_589 (IWB4014) TKW (−1.755) 6.34
KA (−0.516) 5.70
602,710,319–602,710,419
C-T
TraesCS6A01G383800
(602699767–602,711,726)
Oxidation-reduction process/MF: oxidoreductase activity/MF: NADP binding/MF: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor/BP: cell redox homeostasis/MF: flavin adenine dinucleotide binding/MF: glutathione-disulfide reductase activity/BP: glutathione metabolic process
  1. TKW Thousand-kernel weight, KL Kernel length and KA Kernel area, Chr Chromosome, Position (Physical, bp); −log10 (p-value (SNP))