Table 2 Distribution of pleiotropic loci associated with two or more grain architecture related traits
From: Genetic dissection of grain architecture-related traits in a winter wheat population
Chr | Marker | Trait/Effect/−log10(p-value) | Marker Position (bp) and alelles | Candidate gene-Genomic location | Annotation |
|---|---|---|---|---|---|
1B | wsnp_Ex_c1600_3051075 (IWA2084) | TKW (+ 1.611) 4.20 KA (+ 0.134) 5.66 | 524,154,547–524,154,747 T-G | TraesCS1B01G303200 (524153507–524,155,132) | Protein of unknown function DUF1677, O. sativa |
2A | Excalibur_c12169_1088 (IWB22047) | TKW (+ 2.176) 6.91 KA (+ 0.576) 5.76 | 82,350,252–82,350,352 A-G | TraesCS2A01G136800 (82349905–82,354,821) | Heat shock protein binding (Gos) Heat shock protein DnaJ, cysteine-rich domain (interpros) |
5B | RAC875_c9150_2945 (IWB61034) | KA (− 0.318) 5.23 KL (− 0.110) 4.20 | 459,477,406–459,477,506 C-T | TraesCS5B01G274000 (459476178–459,493,013) | P-loop containing nucleoside triphosphate hydrolase (interpros) |
6A | BobWhite_c5872_589 (IWB4014) | TKW (−1.755) 6.34 KA (−0.516) 5.70 | 602,710,319–602,710,419 C-T | TraesCS6A01G383800 (602699767–602,711,726) | Oxidation-reduction process/MF: oxidoreductase activity/MF: NADP binding/MF: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor/BP: cell redox homeostasis/MF: flavin adenine dinucleotide binding/MF: glutathione-disulfide reductase activity/BP: glutathione metabolic process |