Gene ID | Annotation | Associated SNP | SNP position on chromosome | P-value | Alleles | MAF |
---|---|---|---|---|---|---|
Winter survival rate | ||||||
 TraesCS2D01G032800 | GroES-like zinc-binding alcohol dehydrogenase family protein | RAC875_c38003_164 | 2D:13007354 | 0.0008 | G/A | 0.21724 |
 TraesCS4A01G469900 | Homeobox BEL1-like protein | Kukri_c18677_237 | 4A:731352373 | 0.0008 | A/G | 0.36738 |
 TraesCS5A01G359900 | Phosphatase 2C family protein | RAC875_c23340_2243 | 5A:561565292 | 0.0008 | A/G | 0.3723 |
 TraesCS5A01G360000 | Low temperature and salt responsive protein | RAC875_c23340_2243 | 5A:561565292 | 0.0008 | A/G | 0.3723 |
 TraesCS5A01G391700 | Vrn-A1 | IAAV3043 | 5A:586537895 | 0.0003 | A/C | 0.08451 |
 TraesCS5A01G394900 | UDP-glucose 6-dehydrogenase | BobWhite_c471_2245 | 5A:588454245 | 0.0002 | A/G | 0.44624 |
 TraesCS5B01G397500 | ABC transporter B family protein | BS00065936_51 | 5B:574848793 | 0.0002 | A/G | 0.16135 |
 TraesCS5B01G454100 | Protein kinase family protein | wsnp_Ku_rep_c102339_89347150 | 5B:626668012 | 0.0003 | A/G | 0.12121 |
 | wsnp_Ex_c53426_56666788 | 5B:626666488 | 0.0007 | G/A | 0.15548 | |
 TraesCS7A01G389900 | Extracellular ligand-gated ion channel protein | BS00024617_51 | 7A:566002702 | 0.0001 | A/G | 0.21715 |
 TraesCS7D01G357200 | Transmembrane protein, putative | Ra_c51831_507 | 7D:460532222 | 6.71E-08 | G/A | 0.0669 |
Days to heading | ||||||
 TraesCS2D01G468900 | Starch synthase family protein | CAP11_c1070_54 | 2D:577071973 | 0.0002 | G/A | 0.42179 |
 TraesCS6D01G212200 | Phenylalanine ammonia-lyase | RAC875_c26887_562 | 6D:300325843 | 0.0009 | G/A | 0.09666 |
 TraesCS7A01G484300 | Receptor-like kinase | wsnp_Ku_c42539_50247597 | 7A:675380487 | 0.0002 | C/A | 0.08772 |
Days to maturity | ||||||
 TraesCS4B01G129300 | Exostosin family protein | RAC875_c35152_372 | 4B:168404351 | 0.0009 | A/G | 0.11228 |
 TraesCS4B01G225800 | Proline-rich protein | Kukri_c5502_2513 | 4B:534190263 | 0.0009 | A/C | 0.31317 |
 TraesCS4B01G226000 | Proline-rich protein | Kukri_c5502_2513 | 4B:534190263 | 0.0009 | A/C | 0.31317 |
 TraesCS5B01G356300 | UTP--glucose-1-phosphate uridylyltransferase | RAC875_c30584_75 | 5B:536161912 | 0.0004 | C/A | 0.41472 |
 TraesCS6A01G117600 | Homeobox protein | wsnp_BG262421A_Ta_2_2 | 6A:87936718 | 0.0009 | G/A | 0.15114 |
 TraesCS6A01G406900 | F-box family protein | RAC875_c14887_829 | 6A:612287507 | 0.0002 | G/A | 0.19965 |
 TraesCS6A01G407000 | F-box family protein | RAC875_c14887_829 | 6A:612287507 | 0.0002 | G/A | 0.19965 |
 TraesCS6A01G407500 | F-box family protein | RAC875_c14887_829 | 6A:612287507 | 0.0002 | G/A | 0.19965 |
 TraesCS6A01G407600 | F-box family protein | RAC875_c14887_829 | 6A:612287507 | 0.0002 | G/A | 0.19965 |
Stem length | ||||||
 TraesCS4B01G052400 | MYB transcription factor | Excalibur_c36630_2194 | 4B:41020506 | 0.0007 | G/A | 0.20285 |
 TraesCS5A01G320500 | Myb factor | Tdurum_contig30483_167 | 5A:533701309 | 0.0004 | A/G | 0.49734 |
Spike length | ||||||
 TraesCS2D01G036800 | Cullin-associated NEDD8-dissociated protein 1 | BS00062567_51 | 2D:13994909 | 0.0008 | A/G | 0.14312 |
Awn length | ||||||
 TraesCS2D01G064400 | F-box family protein | Tdurum_contig42153_6232 | 2D:27609458 | 0.0009 | G/A | 0.08673 |
Number of seeds per spike | ||||||
 TraesCS2B01G087000 | Response regulator 1 | BS00067781_51 | 2B:48944396 | 0.0006 | C/A | 0.21617 |
 TraesCS3A01G311000 | Cytokinin oxidase/dehydrogenase | RFL_Contig2616_1422 | 3A:549908041 | 0.0001 | G/A | 0.05944 |