Table 1 Characteristics of core JA signaling pathway genes in D. catenatum
From: JA signal-mediated immunity of Dendrobium catenatum to necrotrophic Southern Blight pathogen
Gene Family | No | Name | Synonym | Gene ID | Clade | Exon Number | Protein(aa) | Isoform | pI | MW(Da) | Localization Predicted |
|---|---|---|---|---|---|---|---|---|---|---|---|
COI Family | 1 | DcCOI1a | Â | LOC110108433 | 3 | 587 | Â | 6.55 | 66,596.93 | Cytoplasmic | |
2 | DcCOI1b | Â | LOC110114189 | 3 | 586 | Â | 6.68 | 66,194.57 | Cytoplasmic | ||
TIFY Family | 1 | DcTIFY1 | DcZML1 | LOC110094350 | ZML | 8 | 279 | 0 | 6.74 | 30,138.16 | Nuclear |
2 | DcTIFY2a | DcZML3 | LOC110110163 | ZML | 7 | 261 | 0 | 8.26 | 28,094.56 | Nuclear | |
3 | DcTIFY2b | DcZML2 | LOC110111293 | ZML | 8 | 352 | 0 | 6.79 | 38,623.68 | Nuclear | |
4 | DcTIFY3 | DcJAZ6 | LOC110103561 | JAZII | 5 | 216 | 2 | 5.5 | 22,533.06 | Plasma membrane | |
5 | DcTIFY4 | DcPPD | LOC110092376 | PPD | 9 | 357 | 2 | 9.51 | 38,991.08 | Nuclear | |
6 | DcTIFY5a | DcJAZ9 | LOC110112116 | JAZIV | 3 | 155 | 0 | 8.91 | 16,572.53 | Nuclear | |
7 | DcTIFY5b | DcJAZ10 | LOC110104985 | JAZIV | 3 | 142 | 0 | 8.4 | 15,482.58 | Nuclear | |
8 | DcTIFY5c | DcJAZ11 | LOC110110139 | JAZIV | 3 | 147 | 0 | 7.73 | 16,502.96 | Nuclear | |
9 | DcTIFY5d | DcJAZ12 | LOC110103420 | JAZIV | 3 | 156 | 0 | 6.37 | 17,481.81 | Nuclear | |
10 | DcTIFY5e | DcJAZ13 | LOC110097296 | JAZIV | 1 | 123 | 0 | 9.34 | 13,912.86 | Nuclear | |
11 | DcTIFY6a | DcJAZ7 | LOC110094727 | JAZV | 7 | 380 | 0 | 8.7 | 40,866.66 | Nuclear | |
12 | DcTIFY6b | DcJAZ8 | LOC110103933 | JAZV | 7 | 401 | 2 | 9.29 | 43,134.7 | Nuclear | |
13 | DcTIFY8 | DcTIFY8 | LOC110096617 | TIFY | 6 | 414 | 0 | 7.13 | 43,803.04 | Nuclear | |
14 | DcTIFY10a | DcJAZ1 | LOC110108135 | JAZI | 5 | 239 | 0 | 8.55 | 25,603.29 | Chloroplast | |
15 | DcTIFY10b | DcJAZ2 | LOC110113635 | JAZI | 5 | 250 | 0 | 8.43 | 27,286.8 | Chloroplast | |
16 | DcTIFY10c | DcJAZ3 | LOC110116626 | JAZI | 5 | 268 | 0 | 9.18 | 29,731.97 | Nuclear | |
17 | DcTIFY10d | DcJAZ4 | LOC110104382 | JAZI | 5 | 235 | 2 | 8.53 | 26,416.69 | Nuclear | |
18 | DcTIFY10e | DcJAZ5 | LOC110107212 | JAZI | 5 | 217 | 2 | 6 | 24,268.43 | Nuclear | |
MYC Family | 1 | DcMYC2a | Â | LOC110116479 | MYCI | 1 | 651 | 0 | 5.53 | 74,540.42 | Nuclear |
2 | DcMYC2b | Â | LOC110114462 | MYCI | 1 | 636 | 0 | 6.88 | 42,301.88 | Nuclear | |
3 | DcMYC2c | Â | LOC110092865 | MYCI | 1 | 656 | 0 | 5.4 | 73,818.02 | Nuclear | |
4 | DcMYC2d | Â | LOC110094435 | MYCI | 1 | 462 | 0 | 5.12 | 74,172.35 | Nuclear | |
5 | DcJAM1a | Â | LOC110094094 | MYCII | 1 | 499 | 0 | 5.89 | 45,777.65 | Nuclear | |
6 | DcJAM1b | Â | LOC110103241 | MYCII | 3 | 558 | 0 | 5.98 | 45,803.81 | Nuclear | |
7 | DcJAM4a | Â | LOC110113808 | MYCII | 1 | 381 | 0 | 6.92 | 61,580.84 | Nuclear | |
8 | DcJAM4b | Â | LOC110099101 | MYCII | 1 | 419 | 0 | 5.83 | 55,244.9 | Nuclear | |
9 | DcJAM4c | Â | LOC110116682 | MYCII | 1 | 422 | 0 | 5.7 | 69,408.72 | Nuclear | |
10 | DcTT8 | Â | LOC110097687 | MYCIII | 9 | 662 | 0 | 5.18 | 51,218.00 | Nuclear | |
11 | DcEGL3 | Â | LOC110114654 | MYCIV | 9 | 653 | 0 | 5.24 | 72,046.99 | Nuclear | |
12 | DcGL3 | Â | LOC110111891 | MYCIV | 10 | 644 | 0 | 5.95 | 72,002.67 | Nuclear | |