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Table 1 Characteristics of core JA signaling pathway genes in D. catenatum

From: JA signal-mediated immunity of Dendrobium catenatum to necrotrophic Southern Blight pathogen

Gene Family No Name Synonym Gene ID Clade Exon Number Protein(aa) Isoform pI MW(Da) Localization Predicted
COI Family 1 DcCOI1a   LOC110108433 3 587   6.55 66,596.93 Cytoplasmic
2 DcCOI1b   LOC110114189 3 586   6.68 66,194.57 Cytoplasmic
TIFY Family 1 DcTIFY1 DcZML1 LOC110094350 ZML 8 279 0 6.74 30,138.16 Nuclear
2 DcTIFY2a DcZML3 LOC110110163 ZML 7 261 0 8.26 28,094.56 Nuclear
3 DcTIFY2b DcZML2 LOC110111293 ZML 8 352 0 6.79 38,623.68 Nuclear
4 DcTIFY3 DcJAZ6 LOC110103561 JAZII 5 216 2 5.5 22,533.06 Plasma membrane
5 DcTIFY4 DcPPD LOC110092376 PPD 9 357 2 9.51 38,991.08 Nuclear
6 DcTIFY5a DcJAZ9 LOC110112116 JAZIV 3 155 0 8.91 16,572.53 Nuclear
7 DcTIFY5b DcJAZ10 LOC110104985 JAZIV 3 142 0 8.4 15,482.58 Nuclear
8 DcTIFY5c DcJAZ11 LOC110110139 JAZIV 3 147 0 7.73 16,502.96 Nuclear
9 DcTIFY5d DcJAZ12 LOC110103420 JAZIV 3 156 0 6.37 17,481.81 Nuclear
10 DcTIFY5e DcJAZ13 LOC110097296 JAZIV 1 123 0 9.34 13,912.86 Nuclear
11 DcTIFY6a DcJAZ7 LOC110094727 JAZV 7 380 0 8.7 40,866.66 Nuclear
12 DcTIFY6b DcJAZ8 LOC110103933 JAZV 7 401 2 9.29 43,134.7 Nuclear
13 DcTIFY8 DcTIFY8 LOC110096617 TIFY 6 414 0 7.13 43,803.04 Nuclear
14 DcTIFY10a DcJAZ1 LOC110108135 JAZI 5 239 0 8.55 25,603.29 Chloroplast
15 DcTIFY10b DcJAZ2 LOC110113635 JAZI 5 250 0 8.43 27,286.8 Chloroplast
16 DcTIFY10c DcJAZ3 LOC110116626 JAZI 5 268 0 9.18 29,731.97 Nuclear
17 DcTIFY10d DcJAZ4 LOC110104382 JAZI 5 235 2 8.53 26,416.69 Nuclear
18 DcTIFY10e DcJAZ5 LOC110107212 JAZI 5 217 2 6 24,268.43 Nuclear
MYC Family 1 DcMYC2a   LOC110116479 MYCI 1 651 0 5.53 74,540.42 Nuclear
2 DcMYC2b   LOC110114462 MYCI 1 636 0 6.88 42,301.88 Nuclear
3 DcMYC2c   LOC110092865 MYCI 1 656 0 5.4 73,818.02 Nuclear
4 DcMYC2d   LOC110094435 MYCI 1 462 0 5.12 74,172.35 Nuclear
5 DcJAM1a   LOC110094094 MYCII 1 499 0 5.89 45,777.65 Nuclear
6 DcJAM1b   LOC110103241 MYCII 3 558 0 5.98 45,803.81 Nuclear
7 DcJAM4a   LOC110113808 MYCII 1 381 0 6.92 61,580.84 Nuclear
8 DcJAM4b   LOC110099101 MYCII 1 419 0 5.83 55,244.9 Nuclear
9 DcJAM4c   LOC110116682 MYCII 1 422 0 5.7 69,408.72 Nuclear
10 DcTT8   LOC110097687 MYCIII 9 662 0 5.18 51,218.00 Nuclear
11 DcEGL3   LOC110114654 MYCIV 9 653 0 5.24 72,046.99 Nuclear
12 DcGL3   LOC110111891 MYCIV 10 644 0 5.95 72,002.67 Nuclear