Fig. 4

Weighted gene co-expression network analysis of high-variance transcripts in LT, MP, and YH genotypes during fruit development. a Hierarchical clustering tree showing the co-expression modules identified by WGCNA. Each module is labeled with different colour, and each leaf in the tree corresponds to one transcript. b Numbers of the TFs and non-TF transcripts in each module. c Module eigengene expression. The colour of each cell at the row–column intersection indicates the expression level of the module eigengene. d KEGG enrichment analysis of the WGCNA modules. All the KEGG terms with Qvalue < 0.05 are displayed