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Table 3 Collection of features of the set of 12 genes classified as potential regulators based on their differential expression before veraison of PNP. The detailed expression patterns are shown in Figure 5 and Additional file 2: Figure S3. Details on annotation are listed in Additional file 1: Table S13

From: Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time

Gene ID Gene symbol Functional annotation (transferred via BLASTp) Relative transcriptional change
Pre veraison of PNP Before, at or after veraison of PN & PNP
VIT_205s0051g00590 VviPL1 pectate lyase 8 upregulated in PNP peaks before veraison, goes down after veraison
VIT_205s0077g01980 - uncharacterized protein LOC100248252 upregulated in PNP peaks before veraison, stays up after veraison
VIT_206s0004g00070 VviEXPA5 expansin A10 upregulated in PNP upregulated in PN, strong peak before veraison
VIT_206s0009g02560 VviPME10 pectinesterase 2 upregulated in PNP off in PN, may come up later after veraison
VIT_209s0018g01490 - methanol O-anthraniloyltransferase upregulated in PNP goes up before veraison, further up after veraison
VIT_210s0071g01145 VviRTIC1 plant protein with Domain of Unknown Function 789 upregulated in PN off in PNP
VIT_213s0067g02930 VviEXPA14 expansin A8 upregulated in PNP upregulated in PN, peak before veraison, down after
VIT_216s0013g00880 VviOLE5 oleosin 1 upregulated in PNP and PN peaks before veraison, low consistency between years
VIT_216s0022g00960 VviGRIP28 ripening-related protein-like precursor upregulated in PNP goes up before veraison, stays up after veraison
VIT_216s0098g01170 VviHDZ28 homeobox-leucine zipper protein ATHB-12 upregulated in PN up after flowering, goes down long before veraison
VIT_200s0366g00020 VviRTIC2 cysteine-rich receptor-like protein kinase 10 upregulated in PN off in PNP
VIT_200s0956g00020 VviLEC1 nuclear transcription factor Y subunit B-6 upregulated in PNP and PN peaks before/at verais., low consistency between years
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BMC Plant Biology

ISSN: 1471-2229

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