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Table 1 Data sources of thirty-six TCM genomes

From: TCM-Blast for traditional Chinese medicine genome alignment with integrated resources

Latin name Pin Yin Genome sequencing method Reference
Dendrobium Offcinale Tiepishihu combining the second-generation Illumina Hiseq 2000 and third-generation PacBio sequencing technologies Ref [8]
Ginkgo Biloba Yinxing Hiseq 2000/4000 platform Ref [5]
Erigeron Breviscapusd Dengzhanhua Illumina sequencing and PacBio single-molecular real-time sequencing on the Illumina HiSeq platform Ref [24]
Panax Ginseng Sanqi Illumina paired-end libraries for the whole-genome sequencing Ref [26]
Eucommia Ulmoides Duzhong Illumina HiSeq, MiSeq short-read sequencing,and PacBio single molecular long-read sequencing Ref [28]
Punica Granatum Shiliu Illumina paired-end reads of libraries Ref [29]
Dioscorea Routundata Shanyao Illumina MiSeq platform, HiSeq 2500 platform Ref [30]
Ginseng Renshen paired-end sequencing on the HiSeq X-Ten platform (Illumina) Ref [21]
Boea Hygrometrica Niuercao whole-genome shotgun approach (Illumina HiSeq and Roche 454 platforms) Ref [31]
Jatropha Curcas Mafengshu Illumina GAII and HiSeq Ref [7]
Glycyrrhiza Uralensis Gancao short reads from Illumina and long reads from Pacific Biosciences sequencing Ref [1]
Moringa Oleifera Lamu Illumina Hiseq2500TM Ref [32]
Salvia Miltiorrhiza Danshen Illumina sequencing and PacBio sequencing, Ref [33]
Cannabis Sativa Dama Illumina mate-pair library construction and sequencing Ref [34]
Mentha Longifoli Bohe Illumina sequencing, Pacific Biosystems sequencing Ref [22]
Macleaya Cordata Boluohui paired-end sequences on HiSeq 2000 Ref [35]
Calotropis Gigantea Niuguajiao Illumina HiSeq 2500 Ref [36]
Rhodiola Rosea Hongjingtian Illumina HiSeq 2000/4000 platform using a whole genome shotgun sequencing (WGS) strategy Ref [37]
Capsicum annuum Lajiao Illumina HiSeq 2500  
Lilium Baihe Illumina HiSeq X Ten  
Tupaia belangeri Baihuabaihe Illumina HiSeq 2000  
Arctium lappa Niubang Illumina HiSeq X Ten  
Anemone flaccida Ezhangcao Illumina HiSeq 2000  
Atropa belladonna Dianqie RNA-seq for expression abundances  
Digitalis purpurea Zihuayangdihuang RNA-seq for expression abundances  
Dioscorea villosa Changroumaoshuyu RNA-seq for expression abundances  
Echinacea purpurea Zizhuiyu RNA-seq for expression abundances  
Hoodia gordonii Hutieyaxianrenzhang RNA-seq for expression abundances  
Hypericum perforatum Guanyejinsitao RNA-seq for expression abundances  
Panax quinquefolius Xiyangshen RNA-seq for expression abundances  
Rauvolfia serpentina yinduluofumu RNA-seq for expression abundances  
Rosmarinus officinalis Midiexiang RNA-seq for expression abundances  
Valeriana officinalis Xiecao RNA-seq for expression abundances  
Camptotheca acuminata Huaxishu Illumina sequencing platform Ref [38]
Catharanthus roseus Changchunhua whole genome shotgun sequencing approach Ref [39]
Lepidium Meyenii Maca Illumina HiSeq 2500 platform yielded 1.88 billion reads in ten paired-end libraries Ref [40]