Table 1 Data sources of thirty-six TCM genomes

Dendrobium Offcinale

Tiepishihu

combining the second-generation Illumina Hiseq 2000 and third-generation PacBio sequencing technologies

Ref [8]

Ginkgo Biloba

Yinxing

Hiseq 2000/4000 platform

Ref [5]

Erigeron Breviscapusd

Dengzhanhua

Illumina sequencing and PacBio single-molecular real-time sequencing on the Illumina HiSeq platform

Ref [24]

Panax Ginseng

Sanqi

Illumina paired-end libraries for the whole-genome sequencing

Ref [26]

Eucommia Ulmoides

Duzhong

Illumina HiSeq, MiSeq short-read sequencing,and PacBio single molecular long-read sequencing

Ref [28]

Punica Granatum

Shiliu

Illumina paired-end reads of libraries

Ref [29]

Dioscorea Routundata

Shanyao

Illumina MiSeq platform, HiSeq 2500 platform

Ref [30]

Ginseng

Renshen

paired-end sequencing on the HiSeq X-Ten platform (Illumina)

Ref [21]

Boea Hygrometrica

Niuercao

whole-genome shotgun approach (Illumina HiSeq and Roche 454 platforms)

Ref [31]

Jatropha Curcas

Mafengshu

Illumina GAII and HiSeq

Ref [7]

Glycyrrhiza Uralensis

Gancao

short reads from Illumina and long reads from Pacific Biosciences sequencing

Ref [1]

Moringa Oleifera

Lamu

Illumina Hiseq2500TM

Ref [32]

Salvia Miltiorrhiza

Danshen

Illumina sequencing and PacBio sequencing,

Ref [33]

Cannabis Sativa

Dama

Illumina mate-pair library construction and sequencing

Ref [34]

Mentha Longifoli

Bohe

Illumina sequencing, Pacific Biosystems sequencing

Ref [22]

Macleaya Cordata

Boluohui

paired-end sequences on HiSeq 2000

Ref [35]

Calotropis Gigantea

Niuguajiao

Illumina HiSeq 2500

Ref [36]

Rhodiola Rosea

Hongjingtian

Illumina HiSeq 2000/4000 platform using a whole genome shotgun sequencing (WGS) strategy

Ref [37]

Capsicum annuum

Lajiao

Illumina HiSeq 2500

Lilium

Baihe

Illumina HiSeq X Ten

Tupaia belangeri

Baihuabaihe

Illumina HiSeq 2000

Arctium lappa

Niubang

Illumina HiSeq X Ten

Anemone flaccida

Ezhangcao

Illumina HiSeq 2000

Atropa belladonna

Dianqie

RNA-seq for expression abundances

Digitalis purpurea

Zihuayangdihuang

RNA-seq for expression abundances

Dioscorea villosa

Changroumaoshuyu

RNA-seq for expression abundances

Echinacea purpurea

Zizhuiyu

RNA-seq for expression abundances

Hoodia gordonii

Hutieyaxianrenzhang

RNA-seq for expression abundances

Hypericum perforatum

Guanyejinsitao

RNA-seq for expression abundances

Panax quinquefolius

Xiyangshen

RNA-seq for expression abundances

Rauvolfia serpentina

yinduluofumu

RNA-seq for expression abundances

Rosmarinus officinalis

Midiexiang

RNA-seq for expression abundances

Valeriana officinalis

Xiecao

RNA-seq for expression abundances

Camptotheca acuminata

Huaxishu

Illumina sequencing platform

Ref [38]

Catharanthus roseus

Changchunhua

whole genome shotgun sequencing approach

Ref [39]

Lepidium Meyenii

Maca

Illumina HiSeq 2500 platform yielded 1.88 billion reads in ten paired-end libraries

Ref [40]