From: TCM-Blast for traditional Chinese medicine genome alignment with integrated resources
Latin name | Pin Yin | Genome sequencing method | Reference |
---|---|---|---|
Dendrobium Offcinale | Tiepishihu | combining the second-generation Illumina Hiseq 2000 and third-generation PacBio sequencing technologies | Ref [8] |
Ginkgo Biloba | Yinxing | Hiseq 2000/4000 platform | Ref [5] |
Erigeron Breviscapusd | Dengzhanhua | Illumina sequencing and PacBio single-molecular real-time sequencing on the Illumina HiSeq platform | Ref [24] |
Panax Ginseng | Sanqi | Illumina paired-end libraries for the whole-genome sequencing | Ref [26] |
Eucommia Ulmoides | Duzhong | Illumina HiSeq, MiSeq short-read sequencing,and PacBio single molecular long-read sequencing | Ref [28] |
Punica Granatum | Shiliu | Illumina paired-end reads of libraries | Ref [29] |
Dioscorea Routundata | Shanyao | Illumina MiSeq platform, HiSeq 2500 platform | Ref [30] |
Ginseng | Renshen | paired-end sequencing on the HiSeq X-Ten platform (Illumina) | Ref [21] |
Boea Hygrometrica | Niuercao | whole-genome shotgun approach (Illumina HiSeq and Roche 454 platforms) | Ref [31] |
Jatropha Curcas | Mafengshu | Illumina GAII and HiSeq | Ref [7] |
Glycyrrhiza Uralensis | Gancao | short reads from Illumina and long reads from Pacific Biosciences sequencing | Ref [1] |
Moringa Oleifera | Lamu | Illumina Hiseq2500TM | Ref [32] |
Salvia Miltiorrhiza | Danshen | Illumina sequencing and PacBio sequencing, | Ref [33] |
Cannabis Sativa | Dama | Illumina mate-pair library construction and sequencing | Ref [34] |
Mentha Longifoli | Bohe | Illumina sequencing, Pacific Biosystems sequencing | Ref [22] |
Macleaya Cordata | Boluohui | paired-end sequences on HiSeq 2000 | Ref [35] |
Calotropis Gigantea | Niuguajiao | Illumina HiSeq 2500 | Ref [36] |
Rhodiola Rosea | Hongjingtian | Illumina HiSeq 2000/4000 platform using a whole genome shotgun sequencing (WGS) strategy | Ref [37] |
Capsicum annuum | Lajiao | Illumina HiSeq 2500 | Â |
Lilium | Baihe | Illumina HiSeq X Ten | Â |
Tupaia belangeri | Baihuabaihe | Illumina HiSeq 2000 | Â |
Arctium lappa | Niubang | Illumina HiSeq X Ten | Â |
Anemone flaccida | Ezhangcao | Illumina HiSeq 2000 | Â |
Atropa belladonna | Dianqie | RNA-seq for expression abundances | Â |
Digitalis purpurea | Zihuayangdihuang | RNA-seq for expression abundances | Â |
Dioscorea villosa | Changroumaoshuyu | RNA-seq for expression abundances | Â |
Echinacea purpurea | Zizhuiyu | RNA-seq for expression abundances | Â |
Hoodia gordonii | Hutieyaxianrenzhang | RNA-seq for expression abundances | Â |
Hypericum perforatum | Guanyejinsitao | RNA-seq for expression abundances | Â |
Panax quinquefolius | Xiyangshen | RNA-seq for expression abundances | Â |
Rauvolfia serpentina | yinduluofumu | RNA-seq for expression abundances | Â |
Rosmarinus officinalis | Midiexiang | RNA-seq for expression abundances | Â |
Valeriana officinalis | Xiecao | RNA-seq for expression abundances | Â |
Camptotheca acuminata | Huaxishu | Illumina sequencing platform | Ref [38] |
Catharanthus roseus | Changchunhua | whole genome shotgun sequencing approach | Ref [39] |
Lepidium Meyenii | Maca | Illumina HiSeq 2500 platform yielded 1.88 billion reads in ten paired-end libraries | Ref [40] |