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Table 3 Stable and major QTL identified for spike fertility related traits in both populations

From: Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations

Traita QTL Popb Envc Closest marker Distance (cM) IWGSC Ref Seq v1.0 (Mb) LOD Addd R2
SL QSL.perg-2B BP11xB2002 BLUE wsnp_Ex_rep_c70228_69172301 77.6 389.5 4.80 -3.2 16.4%
E1 RAC875_c27297_2153 78.6 385.2 3.62 -3.8 11.9%
E2 RAC875_c27297_2153 78.6 385.2 5.12 -3.1 16.6%
QSL.perg-5A B19xB2002 E5 BS00022003_51 41.2 444.8 2.84 -2.0 8.4%
E2 wsnp_Ex_c19647_28632894 44.2 470.0 3.68 -2.4 11.6%
E3 Kukri_rep_c72046_78 48.8 512.2 7.99 -4.0 24.0%
BLUE Kukri_rep_c72046_78 48.8 512.2 9.56 -3.4 27.8%
E1 BS00022818_51 49.3 524.2 4.50 -3.9 14.9%
QSL.perg-7A BP11xB2002 E3 Tdurum_contig16244_105 36.1 68.9 6.57 -3.7 17.0%
BLUE wsnp_Ku_c57198_60433631 42.2 78.4 3.99 -2.7 12.4%
E2 wsnp_Ra_rep_c69620_67130107 45.1 85.6 2.92 -2.2 8.5%
E1 wsnp_Ra_rep_c69620_67130107 46.1 85.6 3.41 -4.3 14.5%
TS QTS.perg-2D BP11xB2002 E3 Tdurum_contig17626_210 60.5 571.5 5.02 -0.9 24.1%
E2 Tdurum_contig17626_210 65.5 571.5 4.43 -0.8 17.0%
BLUE Tdurum_contig17626_210 68.1 571.5 8.32 -0.8 21.0%
E1 RAC875_c11093_174 82.4 590.1 10.12 -1.0 24.8%
QTS.perg-3A B19xB2002 E5 RAC875_c77648_367 3.4 12.2 5.99 -1.0 15.7%
BLUE Excalibur_c62042_175 5.4 13.9 5.79 -0.7 17.2%
E1 Kukri_rep_c75764_60 8.1 20.1 5.02 -0.8 20.6%
QTS.perg-7A BP11xB2002 BLUE Ku_c68368_1724 138.1 701.6 3.82 -0.5 8.2%
E1 wsnp_Ku_c16022_24798741 143.2 725.9 3.02 -0.5 5.7%
B19xB2002 E3 IAAV6957 90.5 675.2 5.96 -0.6 19.8%
CN QCN.perg-2A BP11xB2002 E3 BS00091763_51 83.0 773.2 3.82 -0.13 14.0%
B19xB2002 E1 BobWhite_c17113_240 81.1 751.6 3.06 -0.13 10.8%
BLUE Excalibur_c35919_107 83.7 754.5 5.07 -0.15 16.9%
E5 wsnp_Ex_c2137_4014287 86.6 755.9 4.88 -0.20 15.1%
QCN.perg-5A BP11xB2002 E2 wsnp_Ex_c24215_33462239 57.1 526.6 9.44 -0.16 31.2%
BLUE wsnp_Ex_c24215_33462239 57.1 526.6 9.46 -0.16 26.5%
B19xB2002 E3 Kukri_rep_c72046_78 48.8 512.2 5.48 -0.13 19.6%
FF QFF.perg-2B BP11xB2002 E3 JD_c10643_840 89.6 683.2 4.85 -3.75 14.8%
B19xB2002 E3 Tdurum_contig12879_1200 64.2 712.6 7.85 -3.81 30.7%
E2 Kukri_rep_c68903_301 65.1 730.2 7.15 -3.32 32.7%
BLUE Kukri_rep_c68903_301 65.7 730.2 8.67 -2.66 32.7%
QFF.perg-7B B19xB2002 BLUE Kukri_c51101_351 61.2 630.1 5.12 1.73 15.7%
E3 Tdurum_contig47633_304 65.2 659.7 3.00 2.07 10.0%
E1 Tdurum_contig4658_106 71.7 680.2 4.56 3.61 17.2%
FS QFS.perg-2B BP11xB2002 E3 BS00064318_51 86.8 686.0 8.01 -0.78 20.2%
B19xB2002 E3 Tdurum_contig12879_1200 64.2 712.6 3.28 -0.43 11.0%
E2 RAC875_c81984_707 64.6 719.8 4.57 -0.52 16.8%
BLUE RAC875_c81984_707 64.6 719.8 4.64 -0.44 15.5%
QFS.perg-3A B19xB2002 E3 Excalibur_c62042_175 5.4 13.9 3.28 -0.41 11.6%
E2 Kukri_rep_c75764_60 8.1 20.1 2.83 -0.36 9.8%
E1 BS00049032_51 10.6 25.9 5.37 -0.78 23.1%
QFS.perg-5B BP11xB2002 E2 RFL_Contig5461_683 48.7 580.4 8.67 -0.88 32.1%
BLUE RFL_Contig5461_683 48.7 580.4 4.36 -0.46 10.9%
B19xB2002 E2 Vrn-B1: Excalibur_c5329_1335 65.3 580.7 4.17 -0.47 14.3%
FFTS QFFTS.perg-5A BP11xB2002 E3 wsnp_Ex_c24215_33462239 57.1 526.6 3.25 0.11 10.1%
B19xB2002 E3 wsnp_CAP11_c1740_947838 51.3 536.7 4.17 0.10 17.4%
E1 RAC875_rep_c107228_92 70.5 567.7 3.12 0.13 14.3%
BLUE RAC875_rep_c107228_92 70.5 567.7 3.24 0.09 13.1%
QFFTS.perg-5B BP11xB2002 E2 wsnp_Ku_c35090_44349517 9.3 34.3 5.68 0.09 18.0%
E1 Kukri_rep_c71114_838 12.9 70.3 3.93 0.14 12.6%
BLUE Kukri_rep_c71114_838 12.9 70.3 8.53 0.15 30.2%
E3 Ex_c68034_498 15.0 21.5 6.06 0.16 20.8%
FFFS QFFFS.perg-7B B19xB2002 BLUE BS00063208_51 61.7 637.6 5.69 0.09 19.2%
E3 Kukri_c100592_82 62.7 648.1 4.41 0.10 16.3%
E1 RAC875_c60191_114 71.7 697.1 5.06 0.15 21.8%
R QR.perg-2A BP11xB2002 E1 wsnp_CAP8_c1580_908907 19.6 33.3 8.51 8.0 27.1%
BLUE wsnp_CAP8_c1580_908907 19.6 33.3 5.91 4.2 14.5%
B19xB2002 E5 Kukri_c17467_2711 0.0 4.7 2.54 3.3 5.3%
QR.perg-3B BP11xB2002 E2 Jagger_c522_55 66.2 730.2 5.21 4.4 16.4%
E3 Kukri_rep_c94476_152 77.7 745.7 3.12 9.5 22.6%
E4 CAP12_c2348_133 86.1 732.4 4.62 4.4 16.1%
BLUE Excalibur_c18410_136 89.3 752.1 7.65 5.2 21.1%
QR.perg-6A BP11xB2002 E3 Tdurum_contig100733_89 33.7 22.0 4.91 -8.4 19.1%
BLUE RFL_Contig2954_548 69.5 23.9 4.19 -3.0 7.4%
B19xB2002 E1 BobWhite_c3714_659 1.8 8.0 2.66 -5.6 11.0%
BLUE BS00083630_51 0.0 5.6 7.02 -5.5 26.9%
GLPA QGLPA.perg-1A B19xB2002 BLUE wsnp_Ex_c4310_7770452 144.4 464.3 10.85 -27 32.7%
E1 RAC875_c53185_802 148.4 480.5 5.84 -30 21.3%
E4 RAC875_c53185_802 148.4 480.5 5.70 -33 21.9%
QGLPA.perg-3A B19xB2002 BLUE Excalibur_c46600_919 44.9 648.0 2.54 -11 5.9%
E1 Kukri_c18420_705 51.2 663.2 3.13 -19 9.1%
E5 Tdurum_contig15928_135 75.0 709.1 3.98 -24 11.0%
QGLPA.perg-5B BP11xB2002 BLUE RAC875_c60758_623 64.3 597.2 5.11 18 13.2%
E3 BS00037023_51 72.3 654.5 3.15 41 14.6%
B19xB2002 E5 Tdurum_contig13773_321 69.4 595.7 6.51 36 24.4%
QGLPA.perg-7A BP11xB2002 BLUE Kukri_c64330_58 33.3 62.9 3.02 -13 7.3%
E3 Tdurum_contig82510_556 37.5 76.9 2.95 -33 10.0%
B19xB2002 E1 IACX17522 34.8 57.9 3.73 -25 11.2%
CH QCH.perg-1A B19xB2002 BLUE wsnp_Ex_c4310_7770452 144.2 464.3 9.55 -29 29.40%
E4 RAC875_c53185_802 148.4 480.5 5.21 -37 20.9%
E1 BS00023126_51 157.4 480.6 5.15 -36 22.0%
QCH.perg-2B BP11xB2002 E1 wsnp_Ra_c4126_7552133 84.0 409.3 5.98 -35 25.0%
E3 Kukri_rep_c91092_553 84.8 442.3 3.83 -48 13.7%
B19xB2002 E3 wsnp_Ex_rep_c104478_89183627 57.1 447.8 2.82 -35 10.0%
GN QGN.perg-5A B19xB2002 E2 BS00083507_51 42.2 461.5 4.56 1.8 14.6%
E5 BS00083507_51 42.2 461.5 3.89 2.3 14.5%
BLUE Ex_c19057_965 44.7 473.6 5.00 1.8 17.5%
GW QGW.perg-5A BP11xB2002 E3 Tdurum_contig67291_367 78.1 573.8 5.59 3.0 20.1%
BLUE Tdurum_contig67291_367 78.1 573.8 3.12 1.2 8.1%
B19xB2002 E3 BS00032146_51 79.8 615.2 3.36 1.5 12.8%
QGW.perg-6B B19xB2002 E4 Kukri_rep_c117390_70 43.4 127.6 7.13 -1.7 21.6%
E2 Kukri_c38398_164 45.5 135.1 5.15 -1.6 14.0%
BLUE Kukri_c38398_164 45.5 135.1 5.73 -1.8 18.2%
  1. SL spike length (mm), TS total spikelets per spike (n° spike−1), CN compactness of the spike (mm node−1), FF fertile florets per spike (n° spike−1), FS fertile spikelets per spike (n° spike−1), FFTS fertile florets per total spikelet (n° spikelet−1), FFFS fertile florets per fertile spikelet (n° spikelet−1), R rachis (mg spike−1), GLPA glume + lemma + palea + awns (mg spike−1), CH chaff (no-grain spike dry weight at harvest mg spike−1), GN grain number (n° spike−1), GW grain weight (mg)
  2. b Population BP11xB2002, Baguette Premium 11 × BioINTA 2002; B19xB2002, Baguette 19 × BioINTA 2002
  3. c Environment E1: Pergamino 2012, E2: Pergamino 2013, E3: Pergamino 2015, E4: Marcos Juárez 2015, E5: Pergamino 2016, BLUE
  4. d Add, additive effects: contribution of parent’s alleles to the larger values. The positive value of additive effect indicates that the Baguette allele increase the corresponding trait. The negative value of additive effect indicates that the BioINTA2002 allele increase the corresponding trait