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Table 4 Twenty most strongly differentially expressed genes of the FbM vs. FbNM analysis. Shown are the transcript name, |log2foldchange| ≥ 2 of the corresponding transcript, the library in which the transcript is upregulated (pattern), gene name based on T. pratense genome annotation, corresponding Phytozome description, gene name and species name of the next homologs and A. thaliana gene name, and locus name based on information available on Tair

From: Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

ID

Pattern

Contig ID

|Log2foldchange| ≥ 2

Class (basis of classifiation)

Gene name T. pratense

Next homolog gen name

next homolog species name

A. thaliana gene name

A. thaliana locus name

1

TPNM3

tdn_100726

−9,4

Biotic stress (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA24659.v2

Medtr4g094772.1

M. truncatula

CYP81D

AT4G37340

2

TPNM3

tgg_49631

−8,0

Biotic stress (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA37846.v2

Medtr6g034470.1

M. truncatula

AT2G34930

3

TPNM3

tdn_152262

−7,9

4

TPNM3

tdn_56712

−7,9

Biotic stress (T. pratense, M. truncatula)

Tp57577_TGAC_v2_mRNA30556.v2

Medtr8g027540.1

M. truncatula

5

TPNM3

tdn_87762

−7,9

Biotic stress (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA10533.v2

Medtr7g451400.1

M. truncatula

ATMCP1B, ATMCPB1

AT1G02170

6

TPNM3

tdn_86129

−7,1

General cell functions (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA10207.v2

Glyma.11G154500.1

G. max

RPB5E

AT3G54490

7

TPNM3

k55_46241

−6,9

Growth (T.pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA31452.v2

Medtr4g128150.1

M. truncatula

histone 4

AT2G28740

8

TPNM3

tdn_55533

−6,2

Abiotic stress (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA39263.v2

Medtr5g007790.1

M. truncatula

ATCRM1, ATXPO1

AT5G17020

9

TPNM3

tgg_51443

−4,7

Growth (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA37076.v2

Medtr5g019580.2

M. truncatula

UGT72E2

AT5G66690

10

TPNM3

tdn_136706

−4,7

11

TPM1

tdn_140636

8,8

General cell functions (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA28209.v2

Medtr8g005980.1

M. truncatula

C-NAD-MDH2

AT5G43330

12

TPM1

tdn_154158

8,9

General cell functions (T. pratense, M. truncatula)

Tp57577_TGAC_v2_mRNA39482.v2

Medtr3g114970.2

M. truncatula

AT5G55150

13

TPM1

tdn_65187

9,1

Transposon (T. pratense, Prunus persica A. thaliana)

Tp57577_TGAC_v2_mRNA30115.v2

Prupe.4G011200.1

Prunus persica

AT4G29090

14

TPM1

tdn_100956

9,2

Metabolism (T. pratense, Capsella rubella, A. thaliana)

Tp57577_TGAC_v2_mRNA9542.v2

Carubv10008027m

Capsella rubella

AHA2

AT4G30190

15

TPM1

k63_21505

9,3

Biotic stress (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA19467.v2

Medtr3g022400.1

M. truncatula

AT3G14470

16

TPM1

tdn_142681

9,3

Secondary metabolite biosynthesis (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA15473.v2

Medtr8g074550.1

M. truncatula

AT2G18570

17

TPM1

k45_6120

9,6

Tp57577_TGAC_v2_mRNA2166.v2

Medtr2g007510.1

M. truncatula

18

TPM1

tdn_52922

10,1

Tp57577_TGAC_v2_mRNA41271.v2

mrna20290.1-v1.0-hybrid

Fragaria vesca

AT1G21280

19

TPM1

tdn_65185

10,9

20

TPM1

tdn_109277

11,7

Transcription (T. pratense, M. truncatula, A. thaliana)

Tp57577_TGAC_v2_mRNA29560.v2

Medtr5g028610.1

M. truncatula

AT3G14460