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Table 4 Twenty most strongly differentially expressed genes of the FbM vs. FbNM analysis. Shown are the transcript name, |log2foldchange| ≥ 2 of the corresponding transcript, the library in which the transcript is upregulated (pattern), gene name based on T. pratense genome annotation, corresponding Phytozome description, gene name and species name of the next homologs and A. thaliana gene name, and locus name based on information available on Tair

From: Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

ID Pattern Contig ID |Log2foldchange| ≥ 2 Class (basis of classifiation) Gene name T. pratense Next homolog gen name next homolog species name A. thaliana gene name A. thaliana locus name
1 TPNM3 tdn_100726 −9,4 Biotic stress (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA24659.v2 Medtr4g094772.1 M. truncatula CYP81D AT4G37340
2 TPNM3 tgg_49631 −8,0 Biotic stress (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA37846.v2 Medtr6g034470.1 M. truncatula AT2G34930
3 TPNM3 tdn_152262 −7,9
4 TPNM3 tdn_56712 −7,9 Biotic stress (T. pratense, M. truncatula) Tp57577_TGAC_v2_mRNA30556.v2 Medtr8g027540.1 M. truncatula
5 TPNM3 tdn_87762 −7,9 Biotic stress (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA10533.v2 Medtr7g451400.1 M. truncatula ATMCP1B, ATMCPB1 AT1G02170
6 TPNM3 tdn_86129 −7,1 General cell functions (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA10207.v2 Glyma.11G154500.1 G. max RPB5E AT3G54490
7 TPNM3 k55_46241 −6,9 Growth (T.pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA31452.v2 Medtr4g128150.1 M. truncatula histone 4 AT2G28740
8 TPNM3 tdn_55533 −6,2 Abiotic stress (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA39263.v2 Medtr5g007790.1 M. truncatula ATCRM1, ATXPO1 AT5G17020
9 TPNM3 tgg_51443 −4,7 Growth (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA37076.v2 Medtr5g019580.2 M. truncatula UGT72E2 AT5G66690
10 TPNM3 tdn_136706 −4,7
11 TPM1 tdn_140636 8,8 General cell functions (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA28209.v2 Medtr8g005980.1 M. truncatula C-NAD-MDH2 AT5G43330
12 TPM1 tdn_154158 8,9 General cell functions (T. pratense, M. truncatula) Tp57577_TGAC_v2_mRNA39482.v2 Medtr3g114970.2 M. truncatula AT5G55150
13 TPM1 tdn_65187 9,1 Transposon (T. pratense, Prunus persica A. thaliana) Tp57577_TGAC_v2_mRNA30115.v2 Prupe.4G011200.1 Prunus persica AT4G29090
14 TPM1 tdn_100956 9,2 Metabolism (T. pratense, Capsella rubella, A. thaliana) Tp57577_TGAC_v2_mRNA9542.v2 Carubv10008027m Capsella rubella AHA2 AT4G30190
15 TPM1 k63_21505 9,3 Biotic stress (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA19467.v2 Medtr3g022400.1 M. truncatula AT3G14470
16 TPM1 tdn_142681 9,3 Secondary metabolite biosynthesis (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA15473.v2 Medtr8g074550.1 M. truncatula AT2G18570
17 TPM1 k45_6120 9,6 Tp57577_TGAC_v2_mRNA2166.v2 Medtr2g007510.1 M. truncatula
18 TPM1 tdn_52922 10,1 Tp57577_TGAC_v2_mRNA41271.v2 mrna20290.1-v1.0-hybrid Fragaria vesca AT1G21280
19 TPM1 tdn_65185 10,9
20 TPM1 tdn_109277 11,7 Transcription (T. pratense, M. truncatula, A. thaliana) Tp57577_TGAC_v2_mRNA29560.v2 Medtr5g028610.1 M. truncatula AT3G14460