Table 1 Data summary of small RNA sequencing in the tomatoes at control, drought, heat and combined stress
From: Unique miRNAs and their targets in tomato leaf responding to combined drought and heat stress
Library | Control | Drought | Heat | Combined stress | ||||
|---|---|---|---|---|---|---|---|---|
Number | Ratio (%) | Number | Ratio (%) | Number | Ratio (%) | Number | Ratio (%) | |
Raw reads | 11,490,162 | 100.00 | 10,175,417 | 100.00 | 12,103,236 | 100.00 | 13,096,254 | 100.00 |
3ADT&length filter | 1,594,860 | 13.88 | 1,390,187 | 13.66 | 1,791,717 | 14.80 | 1,617,878 | 12.35 |
Junk reads | 67,008 | 0.58 | 61,220 | 0.60 | 65,770 | 0.54 | 80,198 | 0.61 |
Rfam | 775,970 | 6.75 | 618,821 | 6.08 | 681,648 | 5.63 | 881,565 | 6.73 |
mRNA | 1,730,428 | 15.06 | 1,363,539 | 13.40 | 1,613,061 | 13.33 | 1,991,808 | 15.21 |
Repeats | 12,631 | 0.11 | 9719 | 0.10 | 12,502 | 0.10 | 17,989 | 0.14 |
valid reads | 7,539,067 | 65.61 | 6,918,517 | 67.99 | 8,148,031 | 67.32 | 8,781,914 | 67.06 |
rRNA | 636,934 | 5.54 | 506,964 | 4.98 | 519,914 | 4.30 | 674,582 | 5.15 |
tRNA | 97,109 | 0.85 | 80,511 | 0.79 | 127,505 | 1.05 | 159,653 | 1.22 |
snoRNA | 6747 | 0.06 | 5404 | 0.05 | 6252 | 0.05 | 8946 | 0.07 |
snRNA | 2998 | 0.03 | 2265 | 0.02 | 1855 | 0.02 | 3307 | 0.03 |
other Rfam RNA | 32,181 | 0.28 | 23,675 | 0.23 | 26,119 | 0.22 | 35,076 | 0.27 |