Table 2 The common QTL related to GWC and GDR in three field trials
QTL (bins) | Field trial | DAP | Rep | Flanking SNPs | Physical Location (Mb) | LOD | AE (%) | R2 (%) |
|---|---|---|---|---|---|---|---|---|
qGwc1.1 (1.04/1.05) | Shandong (2014) | 50 | R1 | SYN3987-PZE-101101518 | 65.66–98.76 | 5.70 | −2.68 | 16.23 |
R2 | SYN3987-PZE-101101518 | 65.66–98.76 | 2.78 | −1.77 | 10.32 | |||
AVE | SYN3987-PZE-101101518 | 65.66–98.76 | 6.53 | −2.65 | 24.47 | |||
Hainan (2014) | 50 | R1 | SYN3987-PZE-101109414 | 65.66–117.16 | 5.68 | −2.32 | 17.55 | |
Shandong (2015) | 50 | R1 | SYN3987-PZA00944.1 | 65.66–89.00 | 3.93 | −1.19 | 12.81 | |
qGwc1.2 (1.05/1.06) | Hainan (2014) | 45 | R1 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 8.34 | −2.32 | 23.74 |
R2 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 3.07 | −1.26 | 7.66 | |||
AVE | PZA00944.1-PZE-101146598 | 89.00–189.77 | 6.65 | −1.74 | 17.50 | |||
50 | R2 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 7.81 | −2.51 | 22.21 | ||
AVE | PZA00944.1-PZE-101146598 | 89.00–189.77 | 6.98 | −2.34 | 19.57 | |||
Shandong (2015) | 55 | R1 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 3.72 | −1.59 | 11.97 | |
AVE | PZA00944.1-PZE-101146598 | 89.00–189.77 | 2.68 | −1.3 | 7.99 | |||
60 | R1 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 6.81 | −2.63 | 24.78 | ||
R2 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 3.03 | −1.64 | 10.86 | |||
AVE | PZA00944.1-PZE-101146598 | 89.00–189.77 | 4.75 | −1.81 | 13.99 | |||
qGwc2.3 (2.06/2.07) | Shandong (2014) | 45 | R2 | PZE-102131962-SYN5428 | 182.34–190.16 | 2.85 | 1.33 | 10.19 |
Shandong (2015) | 50 | R2 | PZE-102131962-PZE-102145606 | 182.34–192.58 | 4.40 | 2.21 | 14.95 | |
AVE | SYN34721-PZE-102137972 | 177.75–186.79 | 4.45 | 1.50 | 14.02 | |||
qGwc3.1 (3.02/3.04) | Shandong (2014) | 45 | AVE | PZE-103015388-PZE-103026528 | 8.27–19.65 | 2.67 | 1.34 | 11.43 |
Shandong (2015) | 45 | R1 | PZE-103014908-PZE-103022844 | 8.04–15.06 | 3.00 | 1.07 | 13.05 | |
qGwc3.2 (3.04/3.05) | Shandong (2014) | 45 | R1 | PZE-103026528-PZE-103061612 | 19.65–106.24 | 4.37 | 1.57 | 15.74 |
R2 | PZE-103036305-PZE-103084178 | 29.80–139.51 | 2.53 | 1.34 | 8.54 | |||
50 | R1 | PZE-103036305-PZE-103054563 | 29.80–63.69 | 3.13 | 3.90 | 15.55 | ||
Hainan (2014) | 45 | R1 | PZE-103033919-PZE-103082105 | 26.45–136.08 | 3.81 | 1.45 | 9.77 | |
R2 | PZE-103033919-PZE-103082105 | 26.45–136.08 | 2.74 | 1.28 | 7.30 | |||
AVE | PZE-103033919-PZE-103084178 | 26.45–139.51 | 5.30 | 1.60 | 13.39 | |||
50 | R1 | PZE-103061612-PZE-103084178 | 106.24–139.51 | 3.69 | 1.90 | 10.31 | ||
Shandong (2015) | 45 | AVE | PZE-103036305-PZE-103082105 | 29.80–136.08 | 2.97 | 0.87 | 9.33 | |
50 | R1 | PZE-103026528-PZE-103061612 | 19.65–106.24 | 2.88 | 1.04 | 9.10 | ||
55 | R1 | PZE-103033919-PZE-103082105 | 26.45–136.08 | 2.67 | 1.37 | 8.54 | ||
60 | AVE | PZE-103036305-PZE-103084178 | 29.80–139.51 | 2.68 | 1.42 | 6.92 | ||
qGwc3.3 (3.05/3.06) | Shandong (2014) | 50 | R1 | PZE-103094339-PZE-103110355 | 155.32–170.68 | 2.93 | 2.98 | 11.29 |
R2 | PZE-103094339-PZE-103110355 | 155.32–170.68 | 3.01 | 1.91 | 11.63 | |||
AVE | PZE-103087199-PZE-103110355 | 144.69–170.68 | 4.42 | 2.18 | 14.86 | |||
Hainan (2014) | 50 | AVE | PZE-103094339-SYN31220 | 155.32–180.98 | 2.76 | 1.49 | 7.31 | |
qGwc5.2 (5.05/5.06) | Hainan (2014) | 45 | R1 | SYN20663-SYN14995 | 181.89–203.82 | 4.90 | −2.06 | 13.97 |
AVE | SYN20663-SYN14995 | 181.89–203.82 | 2.92 | −1.22 | 8.33 | |||
Shandong (2015) | 60 | AVE | SYN7361-PZE-105137926 | 176.12–192.86 | 3.48 | −2.00 | 10.23 | |
qGdr1.2 (1.05/06) | Shandong (2014) | 45–50 | R1 | PZE-101093040-PZE-101135767 | 85.72–175.64 | 3.47 | 1.64 | 14.46 |
Shandong (2015) | 50–55 | R1 | PZE-101093040-PZE-101135767 | 85.72–175.64 | 2.94 | 1.09 | 11.38 | |
R2 | PZA00944.1-PZE-101146598 | 89.00–189.77 | 2.95 | 1.16 | 9.44 |