Table 2 Transcripts differentially expressed in the shoot tips between normal and dwarfed individuals of the Vitis vinifera cv. Cabernet-Sauvignon x V. riparia cv. Gloire de Montpellier F2 population (CS x RGM_F2)
Expression level (log2) | |||||||
|---|---|---|---|---|---|---|---|
Microarray identifier | Mean Dwarfed | Mean Normal | Dwarf - Normal | p value adjusted with Holm | Gene identifier V2 | Gene name | CRIBI annotation |
CHRUN_JGVV1308_2_T01 | 5.2 | 11.1 | −6.0 | 0.00 | VIT_200s1308g00020 | upf0308 protein chloroplastic-like | |
CHRUN_JGVV566_1_T01 | 5.0 | 10.4 | −5.4 | 0.00 | VIT_200s0566g00010 | upf0308 protein chloroplastic-like | |
CHR7_JGVV31_29_T01 | 5.3 | 10.6 | −5.4 | 0.00 | VIT_207s0031g00320 | CLF/CURLY LEAF | polycomb protein ez1 set domain protein |
CHR7_JGVV31_32_T01 | 6.2 | 11.3 | −5.1 | 0.00 | VIT_207s0031g00350 | CCoAOMT | caffeoyl-coa o-methyltransferase |
CHR7_JGVV31_30_T01 | 6.2 | 10.7 | −4.5 | 0.00 | VIT_207s0031g00330 | pi-plc x domain-containing protein at5g67130-like | |
CHR7_JGVV31_31_T01 | 5.7 | 9.5 | −3.8 | 0.00 | VIT_207s0031g00340 | f-box protein | |
CHR7_JGVV5_241_T01 | 5.9 | 8.9 | −3.0 | 0.03 | VIT_207s0005g02490 | CYP709B2 | cytochrome p450 |
CHR5_JGVV77_76_T01 | 5.6 | 7.5 | −1.9 | 0.03 | VIT_205s0077g01020 | probable n-acetyltransferase hookless 1 | |
CHR7_JGVV129_32_T01 | 11.3 | 10.3 | 1.0 | 0.05 | VIT_207s0129g00290 | Formamidase | |
CHR17_JGVV0_115_T01 | 9.0 | 7.8 | 1.1 | 0.01 | VIT_217s0000g09080 | MYB50 MYB55 MYB86 | hypothetical protein r2r3-myb transcription |
CHR2_JGVV87_15_T01 | 12.3 | 11.1 | 1.2 | 0.05 | VIT_202s0087g00840 | ABCG14 | white-brown-complex abc transporter family |
CHR8_JGVV7_740_T01 | 11.1 | 9.9 | 1.2 | 0.03 | VIT_208s0007g01180 | receptor protein kinase 1-like | |
CHR8_JGVV40_125_T01 | 6.2 | 5.0 | 1.2 | 0.02 | VIT_208s0040g02020 | FLA11 | fasciclin-like arabinogalactan protein 11-like |
CHR13_JGVV19_208_T01 | 11.6 | 10.0 | 1.5 | 0.02 | VIT_213s0019g03130 VIT_213s0019g03120 | UGT85A2/ UGT85A1 | udp-glycosyltransferase 85a1 |
CHR13_JGVV106_5_T01 | 9.9 | 8.3 | 1.5 | 0.03 | VIT_213s0106g00060 | ankyrin repeat-containing | |
CHR6_JGVV9_33_T01 | 12.7 | 11.1 | 1.6 | 0.04 | VIT_206s0009g03450 | LPR1 | lateral root primordium protein |
CHR16_JGVV22_167_T01 | 6.6 | 5.0 | 1.6 | 0.01 | VIT_216s0022g00560 | paired amphipathic helix protein sin3 | |
CHR7_GSVIVT00000186001_T01 | 9.1 | 7.5 | 1.6 | 0.03 | VIT_207s0129g00750 | isoflavone 2 –hydroxylase | |
CHR19_JGVV85_28_T01 | 9.0 | 7.3 | 1.8 | 0.04 | VIT_219s0085g00950 | NAC028 | nac domain ipr003441 |
CHR3_JGVV17_56_T01 | 8.8 | 7.0 | 1.8 | 0.00 | VIT_203s0017g01010 | AMC1/Metacaspase-1 | hypothetical protein |
CHR18_RANDOM_JGVV82_56_T01 | 8.2 | 6.3 | 1.9 | 0.01 | VIT_218s0001g04830 | TPS21/terpene synthase 21 | beta-caryophyllene synthase |
CHR4_JGVV43_22_T01 | 7.1 | 5.0 | 2.1 | 0.02 | VIT_204s0043g00300 | hypothetical protein tpx2 (targeting protein for xklp2) family protein | |
CHR1_JGVV150_30_T01 | 8.1 | 6.1 | 2.1 | 0.05 | VIT_201s0150g00300 | GH3 | indole-3-acetic acid-amido synthetase |
CHR4_GSVIVT00035889001_T01 | 7.9 | 5.7 | 2.2 | 0.05 | VIT_204s0008g05790 | hypothetical protein | |
CHR7_JGVV129_29_T01 | 10.6 | 8.4 | 2.2 | 0.02 | VIT_207s0129g00290 | formamidase | |
CHRUN_GSVIVT00006381001_T01 | 8.7 | 6.5 | 2.3 | 0.04 | VIT_200s0358g00020 | hypothetical protein | |
CHR13_RANDOM_JGVV112_22_T01 | 11.2 | 8.9 | 2.3 | 0.01 | VIT_213s0067g00620 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase | |
CHR8_JGVV40_238_T01 | 11.8 | 9.4 | 2.5 | 0.04 | VIT_208s0040g00820 | CYP94D2 | cytochrome p450 |
CHR6_JGVV4_547_T01 | 11.1 | 8.5 | 2.6 | 0.00 | VIT_206s0004g02580 | BLH8 | bel1 homeotic hypothetical protein |
CHR2_JGVV25_23_T01 | 10.6 | 7.9 | 2.7 | 0.00 | VIT_202s0025g00250 | SP1L5/SPIRAL1-like 5 | nitrilase-associated protein |
CHR16_PDVV115_38_T01 | 8.7 | 5.9 | 2.8 | 0.00 | VIT_216s0115g00410 | hypothetical protein | |
CHR14_GSVIVT00030939001_T01 | 8.6 | 5.8 | 2.8 | 0.00 | VIT_214s0006g02160 | probable s-adenosylmethionine-dependent methyltransferase at5g37990 | |
CHR8_JGVV40_281_T01 | 10.4 | 7.5 | 2.9 | 0.02 | VIT_208s0040g00380 | probable s-acyltransferase at5g05070-like | |
CHR15_JGVV24_108_T01 | 9.4 | 6.5 | 2.9 | 0.00 | VIT_215s0024g00440 | disease resistance protein rga3-like | |
CHR14_JGVV83_93_T01 | 8.5 | 5.5 | 3.0 | 0.00 | VIT_214s0083g01050 | SEP1 | mads-box protein |
CHR8_JGVV7_766_T01 | 11.9 | 8.9 | 3.0 | 0.01 | VIT_208s0007g00890 | tropinone reductase homolog at1g07440 | |
CHR7_JGVV31_36_T01 | 8.4 | 5.3 | 3.0 | 0.02 | VIT_207s0031g00400 | zinc finger protein | |
CHR12_JGVV35_122_T01 | 8.3 | 5.1 | 3.3 | 0.01 | VIT_212s0035g00900 | JAZ12/jasmonate-zim-domain protein 12 | protein tify 3b |
CHR5_GSVIVT00029081001_T01 | 8.6 | 4.9 | 3.7 | 0.00 | VIT_205s0051g00880 | hypothetical protein | |
CHRUN_GSVIVT00003451001_T01 | 8.2 | 4.4 | 3.8 | 0.00 | VIT_200s0193g00010 | hypothetical protein | |
CHR19_JGVV15_10_T01 | 9.2 | 5.3 | 3.8 | 0.00 | VIT_219s0015g00100 | CYP71B7 | cytochrome p450 |
CHR17_JGVV0_480_T01 | 9.1 | 5.2 | 3.9 | 0.00 | VIT_217s0000g05000 | SEP2 | sepallata1-like protein |
CHR14_JGVV108_72_T01 | 10.2 | 6.1 | 4.1 | 0.00 | VIT_214s0108g00760 | MIF2A | zf-hd homeobox protein at4g24660-like |
CHR1_JGVV11_153_T01 | 9.4 | 5.2 | 4.2 | 0.01 | VIT_201s0011g05100 | MLP34 | major latex |
CHR10_JGVV3_187_T01 | 13.7 | 9.4 | 4.3 | 0.00 | VIT_210s0003g02070 | AG SHP1 | agamous-like protein |
CHRUN_JGVV193_1_T01 | 9.9 | 5.6 | 4.3 | 0.00 | VIT_200s0193g00020 | hypothetical protein | |
CHR17_JGVV0_372_T01 | 10.3 | 5.7 | 4.5 | 0.00 | VIT_217s0000g06200 | MIF1 | zf-hd homeobox protein at4g24660-like |
CHR15_JGVV24_104_T01 | 10.0 | 5.0 | 4.9 | 0.00 | VIT_215s0024g00480 | PP2-A1 | protein phloem protein 2-like a1 |
CHR12_JGVV142_18_T01 | 12.5 | 7.0 | 5.5 | 0.00 | VIT_212s0142g00360 | SHP1 | agamous-like protein |
CHR14_JGVV81_14_T01 | 11.9 | 6.2 | 5.7 | 0.00 | VIT_214s0081g00670 | AHL19, AT-hook motif nuclear-localized protein 19 | dna-binding protein escarola-like |
CHR14_JGVV108_75_T01 | 12.0 | 6.0 | 6.0 | 0.00 | VIT_214s0108g00810 | MIF2B | zf-hd homeobox protein at4g24660-like |
CHR1_JGVV10_295_T01 | 13.1 | 5.7 | 7.4 | 0.00 | VIT_201s0010g03900 | SEP3 | transcription factor |