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Table 2 Transcripts differentially expressed in the shoot tips between normal and dwarfed individuals of the Vitis vinifera cv. Cabernet-Sauvignon x V. riparia cv. Gloire de Montpellier F2 population (CS x RGM_F2)

From: Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

  Expression level (log2)  
Microarray identifier Mean Dwarfed Mean Normal Dwarf - Normal p value adjusted with Holm Gene identifier V2 Gene name CRIBI annotation
CHRUN_JGVV1308_2_T01 5.2 11.1 −6.0 0.00 VIT_200s1308g00020   upf0308 protein chloroplastic-like
CHRUN_JGVV566_1_T01 5.0 10.4 −5.4 0.00 VIT_200s0566g00010   upf0308 protein chloroplastic-like
CHR7_JGVV31_29_T01 5.3 10.6 −5.4 0.00 VIT_207s0031g00320 CLF/CURLY LEAF polycomb protein ez1 set domain protein
CHR7_JGVV31_32_T01 6.2 11.3 −5.1 0.00 VIT_207s0031g00350 CCoAOMT caffeoyl-coa o-methyltransferase
CHR7_JGVV31_30_T01 6.2 10.7 −4.5 0.00 VIT_207s0031g00330   pi-plc x domain-containing protein at5g67130-like
CHR7_JGVV31_31_T01 5.7 9.5 −3.8 0.00 VIT_207s0031g00340   f-box protein
CHR7_JGVV5_241_T01 5.9 8.9 −3.0 0.03 VIT_207s0005g02490 CYP709B2 cytochrome p450
CHR5_JGVV77_76_T01 5.6 7.5 −1.9 0.03 VIT_205s0077g01020   probable n-acetyltransferase hookless 1
CHR7_JGVV129_32_T01 11.3 10.3 1.0 0.05 VIT_207s0129g00290   Formamidase
CHR17_JGVV0_115_T01 9.0 7.8 1.1 0.01 VIT_217s0000g09080 MYB50 MYB55 MYB86 hypothetical protein r2r3-myb transcription
CHR2_JGVV87_15_T01 12.3 11.1 1.2 0.05 VIT_202s0087g00840 ABCG14 white-brown-complex abc transporter family
CHR8_JGVV7_740_T01 11.1 9.9 1.2 0.03 VIT_208s0007g01180   receptor protein kinase 1-like
CHR8_JGVV40_125_T01 6.2 5.0 1.2 0.02 VIT_208s0040g02020 FLA11 fasciclin-like arabinogalactan protein 11-like
CHR13_JGVV19_208_T01 11.6 10.0 1.5 0.02 VIT_213s0019g03130 VIT_213s0019g03120 UGT85A2/ UGT85A1 udp-glycosyltransferase 85a1
CHR13_JGVV106_5_T01 9.9 8.3 1.5 0.03 VIT_213s0106g00060   ankyrin repeat-containing
CHR6_JGVV9_33_T01 12.7 11.1 1.6 0.04 VIT_206s0009g03450 LPR1 lateral root primordium protein
CHR16_JGVV22_167_T01 6.6 5.0 1.6 0.01 VIT_216s0022g00560   paired amphipathic helix protein sin3
CHR7_GSVIVT00000186001_T01 9.1 7.5 1.6 0.03 VIT_207s0129g00750   isoflavone 2 –hydroxylase
CHR19_JGVV85_28_T01 9.0 7.3 1.8 0.04 VIT_219s0085g00950 NAC028 nac domain ipr003441
CHR3_JGVV17_56_T01 8.8 7.0 1.8 0.00 VIT_203s0017g01010 AMC1/Metacaspase-1 hypothetical protein
CHR18_RANDOM_JGVV82_56_T01 8.2 6.3 1.9 0.01 VIT_218s0001g04830 TPS21/terpene synthase 21 beta-caryophyllene synthase
CHR4_JGVV43_22_T01 7.1 5.0 2.1 0.02 VIT_204s0043g00300   hypothetical protein tpx2 (targeting protein for xklp2) family protein
CHR1_JGVV150_30_T01 8.1 6.1 2.1 0.05 VIT_201s0150g00300 GH3 indole-3-acetic acid-amido synthetase
CHR4_GSVIVT00035889001_T01 7.9 5.7 2.2 0.05 VIT_204s0008g05790   hypothetical protein
CHR7_JGVV129_29_T01 10.6 8.4 2.2 0.02 VIT_207s0129g00290   formamidase
CHRUN_GSVIVT00006381001_T01 8.7 6.5 2.3 0.04 VIT_200s0358g00020   hypothetical protein
CHR13_RANDOM_JGVV112_22_T01 11.2 8.9 2.3 0.01 VIT_213s0067g00620   bifunctional dihydroflavonol 4-reductase flavanone 4-reductase
CHR8_JGVV40_238_T01 11.8 9.4 2.5 0.04 VIT_208s0040g00820 CYP94D2 cytochrome p450
CHR6_JGVV4_547_T01 11.1 8.5 2.6 0.00 VIT_206s0004g02580 BLH8 bel1 homeotic hypothetical protein
CHR2_JGVV25_23_T01 10.6 7.9 2.7 0.00 VIT_202s0025g00250 SP1L5/SPIRAL1-like 5 nitrilase-associated protein
CHR16_PDVV115_38_T01 8.7 5.9 2.8 0.00 VIT_216s0115g00410   hypothetical protein
CHR14_GSVIVT00030939001_T01 8.6 5.8 2.8 0.00 VIT_214s0006g02160   probable s-adenosylmethionine-dependent methyltransferase at5g37990
CHR8_JGVV40_281_T01 10.4 7.5 2.9 0.02 VIT_208s0040g00380   probable s-acyltransferase at5g05070-like
CHR15_JGVV24_108_T01 9.4 6.5 2.9 0.00 VIT_215s0024g00440   disease resistance protein rga3-like
CHR14_JGVV83_93_T01 8.5 5.5 3.0 0.00 VIT_214s0083g01050 SEP1 mads-box protein
CHR8_JGVV7_766_T01 11.9 8.9 3.0 0.01 VIT_208s0007g00890   tropinone reductase homolog at1g07440
CHR7_JGVV31_36_T01 8.4 5.3 3.0 0.02 VIT_207s0031g00400   zinc finger protein
CHR12_JGVV35_122_T01 8.3 5.1 3.3 0.01 VIT_212s0035g00900 JAZ12/jasmonate-zim-domain protein 12 protein tify 3b
CHR5_GSVIVT00029081001_T01 8.6 4.9 3.7 0.00 VIT_205s0051g00880   hypothetical protein
CHRUN_GSVIVT00003451001_T01 8.2 4.4 3.8 0.00 VIT_200s0193g00010   hypothetical protein
CHR19_JGVV15_10_T01 9.2 5.3 3.8 0.00 VIT_219s0015g00100 CYP71B7 cytochrome p450
CHR17_JGVV0_480_T01 9.1 5.2 3.9 0.00 VIT_217s0000g05000 SEP2 sepallata1-like protein
CHR14_JGVV108_72_T01 10.2 6.1 4.1 0.00 VIT_214s0108g00760 MIF2A zf-hd homeobox protein at4g24660-like
CHR1_JGVV11_153_T01 9.4 5.2 4.2 0.01 VIT_201s0011g05100 MLP34 major latex
CHR10_JGVV3_187_T01 13.7 9.4 4.3 0.00 VIT_210s0003g02070 AG SHP1 agamous-like protein
CHRUN_JGVV193_1_T01 9.9 5.6 4.3 0.00 VIT_200s0193g00020   hypothetical protein
CHR17_JGVV0_372_T01 10.3 5.7 4.5 0.00 VIT_217s0000g06200 MIF1 zf-hd homeobox protein at4g24660-like
CHR15_JGVV24_104_T01 10.0 5.0 4.9 0.00 VIT_215s0024g00480 PP2-A1 protein phloem protein 2-like a1
CHR12_JGVV142_18_T01 12.5 7.0 5.5 0.00 VIT_212s0142g00360 SHP1 agamous-like protein
CHR14_JGVV81_14_T01 11.9 6.2 5.7 0.00 VIT_214s0081g00670 AHL19, AT-hook motif nuclear-localized protein 19 dna-binding protein escarola-like
CHR14_JGVV108_75_T01 12.0 6.0 6.0 0.00 VIT_214s0108g00810 MIF2B zf-hd homeobox protein at4g24660-like
CHR1_JGVV10_295_T01 13.1 5.7 7.4 0.00 VIT_201s0010g03900 SEP3 transcription factor
  1. Log2 fold change > 1, p value < 0.05 adjusted with Holm, n = 5