Table 1 Function enrichment analysis of line-specific differentially expressed genes in cold stressed semi-winter (158A) and winter type (SGDH284) B. napus plants
From: Genome-wide identification of cold responsive transcription factors in Brassica napus L
Class | Term_ID | Description | log10(p-value) |
|---|---|---|---|
top10 enriched GO terms for line-specific down-regulated genes | |||
 158A | GO:1901566 | organonitrogen compound biosynthetic process | −12.42 |
GO:1901564 | organonitrogen compound metabolic process | −11.23 | |
GO:0007018 | microtubule-based movement | −10.96 | |
GO:0006928 | movement of cell or subcellular component | −10.82 | |
GO:0007017 | microtubule-based process | −10.15 | |
GO:0006412 | translation | −8.25 | |
GO:0043603 | cellular amide metabolic process | −7.92 | |
GO:0044249 | cellular biosynthetic process | −7.08 | |
GO:1901576 | organic substance biosynthetic process | −6.82 | |
GO:0006270 | DNA replication initiation | −6.40 | |
 SGDH284 | GO:0051707 | response to other organism | −7.89 |
GO:1901605 | alpha-amino acid metabolic process | −7.77 | |
GO:0044283 | small molecule biosynthetic process | −7.66 | |
GO:0046394 | carboxylic acid biosynthetic process | −7.52 | |
GO:0009605 | response to external stimulus | −7.43 | |
GO:0009607 | response to biotic stimulus | −6.55 | |
GO:0016998 | cell wall macromolecule catabolic process | −6.31 | |
GO:0046348 | amino sugar catabolic process | −5.92 | |
GO:0044710 | single-organism metabolic process | −5.62 | |
GO:0006790 | sulfur compound metabolic process | −5.42 | |
top10 enriched GO terms for line-specific up-regulated genes | |||
 158A | GO:0051707 | response to other organism | −9.28 |
GO:0051704 | multi-organism process | −8.19 | |
GO:0009605 | response to external stimulus | −8.18 | |
GO:0009607 | response to biotic stimulus | −7.38 | |
GO:1901565 | organonitrogen compound catabolic process | −6.68 | |
GO:1902578 | single-organism localization | −5.62 | |
GO:0006855 | drug transmembrane transport | −5.51 | |
GO:0042493 | response to drug | −5.42 | |
GO:0055085 | transmembrane transport | −5.07 | |
GO:0044765 | single-organism transport | −4.74 | |
 SGDH284 | GO:0042254 | ribosome biogenesis | −9.72 |
GO:0006396 | RNA processing | −7.68 | |
GO:0034470 | ncRNA processing | −6.64 | |
GO:0051503 | adenine nucleotide transport | −4.82 | |
GO:0030163 | protein catabolic process | −4.59 | |
GO:0044085 | cellular component biogenesis | −4.54 | |
GO:0007275 | multicellular organism development | −4.29 | |
GO:0009793 | embryo development ending in seed dormancy | −4.27 | |
GO:0033523 | histone H2B ubiquitination | −4.09 | |
GO:0016574 | histone ubiquitination | −4.09 | |