Table 2 Gene expression of plant hormones related genes
Pathway | Gene name | Gene ID | ZB107 (RPKM) | ZB306 (RPKM) | log2 FC | P-value | FDR |
|---|---|---|---|---|---|---|---|
Auxin | AUX1 | 29,741.t000002 | 0.86 | 3.68 | 2.1 | 9.58E-20 | 2.23E-19 |
AUX1 | 28,883.t000036 | 80.12 | 0.86 | −6.54 | 0 | 0 | |
TIR1 | 29,908.t000274 | 30.59 | 5.71 | −2.42 | 9.34E-230 | 1.07E-228 | |
AUX|IAA | 29,844.t000020 | 1.26 | 3.45 | 1.46 | 3.59E-05 | 5.60E-05 | |
AUX|IAA | 28,179.t000006 | 232.36 | 56.82 | −2.03 | 0 | 0 | |
ARF10 | 27,538.t000014 | 74.25 | 12.3 | −2.59 | 0 | 0 | |
ARF2 | 29,647.t000040 | 21.7 | 74.29 | 1.78 | 0 | 0 | |
GH3 | 28,152.t000001 | 394.07 | 113.06 | −1.8 | 0 | 0 | |
SAUR | 29,838.t000091 | 0.18 | 43.59 | 7.92 | 2.44E-139 | 1.84E-138 | |
SAUR | 29,739.t000134 | 40.68 | 12.65 | −1.69 | 5.39E-50 | 1.95E-49 | |
CTK | CRE1 | 29,005.t000011 | 101.67 | 2.08 | −5.61 | 0 | 0 |
AHP4 | 29,912.t000167 | 18.47 | 120.46 | 2.71 | 6.50E-248 | 8.01E-247 | |
AHP1 | 29,726.t000066 | 91.15 | 26.59 | −1.78 | 3.85E-113 | 2.44E-112 | |
B-ARR | 29,950.t000033 | 21.97 | 0.44 | −5.63 | 4.71E-215 | 5.11E-214 | |
A-ARR | 29,908.t000174 | 47.41 | 20.25 | −1.23 | 2.01E-51 | 7.43E-51 | |
GA | GID1 | 29,686.t000008 | 28.97 | 3.86 | −2.91 | 2.58E-142 | 1.97E-141 |
GID2 | 30,170.t000622 | 40.12 | 12.36 | −1.70 | 3.00E-55 | 1.16E-54 | |
DELLA | 29,807.t000012 | 71.54 | 8.52 | −3.07 | 0 | 0 | |
ABA | PP2C | 30,075.t000035 | 0.07 | 273.45 | 12.01 | 0 | 0 |
PP2C | 30,128.t000337 | 69.77 | 14.66 | −2.25 | 0 | 0 | |
SnRK2 | 28,725.t000009 | 175.59 | 66.55 | −1.40 | 0 | 0 | |
SnRK2 | 29,908.t000118 | 10.86 | 22.02 | 1.02 | 3.62E-27 | 9.62E-27 | |
ABF | 29,801.t000121 | 55.02 | 15.19 | −1.86 | 1.35E-201 | 1.39E-200 | |
Ethylene | ETR | 28,802.t000007 | 49.56 | 19.23 | −1.37 | 1.09E-198 | 1.10E-197 |
ETR | 29,680.t000086 | 21.25 | 87.53 | 2.04 | 2.69E-155 | 2.20E-154 | |
CTR1 | 29,678.t000014 | 43.32 | 10.27 | −2.08 | 8.75E-205 | 9.11E-204 | |
CTR1 | 30,147.t000229 | 18.26 | 38.74 | 1.09 | 1.08E-53 | 4.08E-53 | |
MPK6 | 29,688.t000016 | 47.68 | 20.31 | −1.23 | 3.95E-63 | 1.65E-62 | |
EIN2 | 30,078.t000113 | 76.78 | 25.36 | −1.60 | 0 | 0 | |
EIN3 | 30,169.t000172 | 20.42 | 9.36 | −1.13 | 5.01E-53 | 1.88E-52 | |
EBF1/2 | 29,848.t000185 | 130.53 | 16.02 | −3.03 | 0 | 0 | |
ERF1/2 | 30,147.t000602 | 1.74 | 0.59 | −1.56 | 0 | 0 | |
BR | BAK1 | 30,190.t000257 | 92.68 | 5.03 | −4.20 | 0 | 0 |
BRI1 | 29,950.t000019 | 0.13 | 79.08 | 9.23 | 0 | 0 | |
BRI1 | 29,820.t000032 | 25.76 | 0.34 | −6.23 | 0 | 0 | |
BKI1 | 30,170.t000310 | 5.19 | 0.55 | −3.23 | 8.68E-19 | 1.98E-18 | |
BSK | 30,190.t000453 | 42.70 | 12.11 | −1.82 | 6.44E-97 | 3.60E-96 | |
BSU1 | 30,128.t000269 | 40.56 | 19.45 | −1.06 | 1.46E-100 | 8.36E-100 | |
BZR1/2 | 29,646.t000010 | 120.71 | 43.54 | −1.47 | 3.29E-232 | 3.79E-231 | |
TCH4 | 30,041.t000001 | 37.08 | 6.77 | −2.45 | 2.06E-91 | 1.10E-90 | |
CYCD3 | 29,168.t000023 | 16.16 | 2.08 | −2.96 | 4.11E-93 | 2.23E-92 |