Skip to main content

Table 5 Results of matches for insertion sequences within Polypodiaceae identified using local BLAST searches

From: Comparative genomic analysis of Polypodiaceae chloroplasts reveals fine structural features and dynamic insertion sequences

Query Subject % Identity Alignment length Start End Location
morffo1 P. bonii 71.2 1217 59,496 58,295 petA-psbJ
P. bifurcatum 70.3 1254 93,132 91,893 rrn16-rps12
morffo2 P. bifurcatum 71.0 1668 95,199 93,541 rrn16-rps12
S. yakushimensis 67.9 1121 117,503 118,561 ycf1-ccsA
L. clathratus
(rrn16-rps12)
L. microphyllum 91.5 1276 97,718 96,461 rps7-psbA
L.microphyllum 88.1 796 98,773 97,983 rps7-psbA
D. roosii 92.0 647 54,866 55,512 rbcL-trnR
D. roosii 86.7 668 55,779 56,443 rbcL-trnR
L. hemionitideus 81.4 737 121,798 121,063 rps15-ycf1
L. hemionitideus 71.3 523 120,796 120,281 rps15-ycf1
P. bifurcatum
(rrn16-rps12)
P. bonii 88.8 1502 58,225 59,724 petA-psbJ
P. bonii 84.7 698 59,636 60,323 petA-psbJ
S. yakushimensis 70.5 831 118,643 117,834 ycf1-ccsA
L. microphyllum
(rps7-psbA)
D. roosii 87.0 1527 56,416 54,895 rbcL-trnR
L. clathratus 91.5 1276 95,574 94,305 rrn16-rps12
L. clathratus 88.1 796 94,304 93,538 rrn16-rps12
L. hemionitideus 81.8 1425 120,281 121,697 rps15-ycf1
D. roosii
(rbcL-trnR)
L. microphyllum 87.0 1527 98,595 97,078 rps7-psbA
L. hemionitideus 79.3 1388 121,661 120,281 rps15-ycf1
L. clathratus 92.0 647 93,658 94,304 rrn16-rps12
L. clathratus 86.7 668 94,307 94,969 rrn16-rps12
P. bonii (petA-psaJ) P. bifurcatum 88.8 1502 91,825 93,310 rrn16-rps12