Table 4 Haplotype analysis of the important loci

QSl-1B

SL

11

2

TCTCATCCCCT**

SL

9.65 ± 0.99

7.77 ± 1.01

8.54 ± 0.85

8.57 ± 1.17

7.31 ± 1.24

8.89 ± 0.98

CTCTGAGATTC

SL

8.95 ± 1.09

7.05 ± 0.96

7.87 ± 0.67

7.79 ± 1.01

6.71 ± 1.02

8.20 ± 0.90

QYpp-3A

YPP

6

3

CCAATG**

YPP

26.56 ± 4.85

22.57 ± 5.17

24.84 ± 3.63

14.36 ± 1.94

19.37 ± 3.89

23.21 ± 5.17

ATAATG

YPP

19.33 ± 6.49

18.74 ± 5.24

19.25 ± 4.20

10.43 ± 3.67

12.96 ± 5.45

16.61 ± 4.95

ATGGGA

YPP

17.65 ± 7.75

16.13 ± 5.59

18.31 ± 4.84

9.22 ± 4.24

10.02 ± 5.51

17.60 ± 4.04

QSl-3B

SL

5

2

CAGTT**

SL

9.38 ± 1.50

7.70 ± 1.02

–

8.36 ± 1.48

–

–

TGTCA

SL

8.84 ± 1.77

7.16 ± 0.91

–

7.60 ± 1.75

–

–

QTkw-4A

TKW

25

2

CCGCCCGGGCGTGCGCGCTGGATCC**

TKW

–

52.36 ± 5.43

46.03 ± 4.75

–

49.14 ± 5.77

40.20 ± 4.80

TTATTGATATACCTATATCCTGAGT

TKW

–

47.92 ± 6.02

40.92 ± 4.79

–

43.60 ± 9.83

37.65 ± 4.99

QPh-4D

PH

4

2

GCTG**

PH

78.14 ± 20.67

77.55 ± 13.49

82.70 ± 14.71

63.40 ± 17.55

58.83 ± 15.80

73.26 ± 12.67

TTCA

PH

67.92 ± 6.00

65.98 ± 5.81

69.37 ± 6.02

57.58 ± 4.86

53.96 ± 6.53

60.63 ± 6.47

Q-5A2

BM YPP

4

2

GACC**

BM

–

–

–

22.84 ± 6.53

–

–

AGAT

BM

–

–

–

19.93 ± 8.86

–

–

GACC**

YPP

–

–

–

11.35 ± 3.11

–

–

AGAT

YPP

–

–

–

9.73 ± 4.30

–

–

Q-5B1

SL BM GN YPP

4

2

AGCA**

BM

–

–

–

22.46 ± 8.29

26.54 ± 10.51

–

GTTG

BM

–

–

–

15.55 ± 5.51

9.04 ± 6.53

–

AGCA**

SL

–

–

–

–

6.94 ± 1.22

–

GTTG

SL

–

–

–

–

5.45 ± 2.54

–

AGCA**

YPP

–

19.28 ± 5.59

–

11.11 ± 3.93

13.88 ± 5.48

–

GTTG

YPP

–

15.33 ± 4.65

–

7.30 ± 2.45

4.51 ± 3.67

–

QSl-5B2

SL

21

2

CTTTTAGCGACCGGGCGGCCC**

SL

–

–

–

–

6.89 ± 1.35

–

TCCCCGAGAGTAAAAAATGTA

SL

–

–

–

–

4.58 ± 2.88

–

Q-5B3

SN BM YPP GN

36

2

GCCCCCTGGCTCCGCCACGCCGGGGGCGTCGTGGCG**

BM

49.02 ± 16.02

–

–

23.90 ± 8.11

–

–

TAAGGTCAATCATATTGTATTAATAAAACTTCCATT

BM

35.86 ± 15.96

–

–

18.35 ± 8.87

–

–

GCCCCCTGGCTCCGCCACGCCGGGGGCGTCGTGGCG**

GN

627.45 ± 194.97

415.44 ± 107.02

–

301.59 ± 113.55

310.88 ± 116.97

–

TAAGGTCAATCATATTGTATTAATAAAACTTCCATT

GN

448.46 ± 203.83

361.03 ± 132.06

–

221.08 ± 105.19

255.05 ± 144.92

–

GCCCCCTGGCTCCGCCACGCCGGGGGCGTCGTGGCG**

SN

15.43 ± 4.51

10.69 ± 2.34

–

6.75 ± 2.32

–

–

TAAGGTCAATCATATTGTATTAATAAAACTTCCATT

SN

11.31 ± 5.38

9.43 ± 3.04

–

5.33 ± 2.46

–

–

GCCCCCTGGCTCCGCCACGCCGGGGGCGTCGTGGCG**

YPP

21.65 ± 6.80

–

–

11.78 ± 3.73

–

–

TAAGGTCAATCATATTGTATTAATAAAACTTCCATT

YPP

16.43 ± 7.39

–

–

9.17 ± 4.39

–

–

Q-7A

SL YPP

12

2

CGTTACGACCCT**

SL

–

7.39 ± 1.02

8.18 ± 0.90

–

–

8.49 ± 1.12

TTACGTAGATAA

SL

–

6.77 ± 0.87

7.28 ± 1.31

–

–

7.76 ± 1.42

CGTTACGACCCT**

YPP

23.71 ± 6.62

–

–

–

–

–

TTACGTAGATAA

YPP

19.08 ± 8.93

–

–

–

–

–