Table 1 AmpliSeq results and classification of markers
Cross A_1 (n = 94) | Cross B_1 (n = 87) | Cross C (n = 84) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sh linka | PHS linka | Whole-genomea | Total | Sh link | PHS link | Whole-genome | Total | Sh link | PHS link | Whole-genome | Total | |
Number of SNP detected markers | 67 | 56 | 176 | 299 | 74 | 41 | 124 | 239 | 68 | 34 | 140 | 242 |
After filtering and before removing duplicateb | 57 | 48 | 112 | 217 | 50 | 14 | 61 | 125 | 43 | 11 | 55 | 109 |
Remove duplicated markers (no. of duplicated marker) | 12 (45) | 18 (30) | 98 (14) | 127 (90) | 10 (40) | 10 (4) | 54 (7) | 74 (51) | 5 (38) | 8 (3) | 49 (6) | 62 (47) |
LG1 | 12 (45) | 2 (1) | 13 (2) | 27 (48) | 10 (40) | 1 (1) | 8 (3) | 19 (44) | 5 (38) | 2 (1) | 6 (3) | 13 (42) |
LG2 | 0 | 0 | 11 (3) | 11 (3) | 0 | 0 | 10 | 10 | 0 | 0 | 4 (1) | 4 (1) |
LG3 | 0 | 2 (3) | 11 (4) | 13 (7) | 0 | 2 (2) | 6 | 8 (2) | 0 | 2 (1) | 11 | 13 (1) |
LG4 | 0 | 7 (1) | 11 (3) | 18 (4) | 0 | 4 (1) | 7 (1) | 11 (2) | 0 | 4 (1) | 6 | 10 (1) |
LG5 | 0 | 0 | 15 | 15 | 0 | 0 | 7 | 7 | 0 | 0 | 9 | 9 |
LG6 | 0 | 7 (25) | 11 (1) | 18 (26) | 0 | 3 | 1 | 4 | 0 | 0 | 3 (1) | 3 (1) |
LG7 | 0 | 0 | 20 | 20 | 0 | 0 | 8 (1) | 8 (1) | 0 | 0 | 5 | 5 |
LG8 | 0 | 0 | 5 (1) | 5 (1) | 0 | 0 | 7 (2) | 7 (2) | 0 | 0 | 5 (1) | 5 (1) |