Demethylation alters transcriptome profiling of buds and leaves in ‘Kyoho’ grape

BMC Plant Biology

Table 1 Number of sequenced reads that mapped to the grapevine genome

Sample	Total Raw Reads (M)	Total Clean Reads (M)	Total Clean Bases (Gb)	Clean^*a Reads Q20(%)	Clean^*b Reads Q30(%)	Clean Reads Ratio(%)	Total Mapping(%)	Uniquely Mapping(%)	GC_Content (%)
BCK1	47.44	45.88	6.88	98.23	94.46	96.71	90.93	88.66	45.81
BCK2	50.63	49.59	7.44	98.23	94.43	97.94	91.01	88.77	45.82
BCK3	47.32	46.36	6.95	98.37	94.82	97.97	90.95	88.64	45.98
5AB1	47.72	45.12	6.77	98.30	94.61	94.55	85.46	82.85	44.15
5AB2	53.28	50.75	7.61	98.30	94.66	95.25	86.26	83.62	44.61
5AB3	47.69	45.15	6.77	98.38	94.78	94.68	86.57	83.89	44.67
LCK1	46.23	43.81	6.57	98.42	94.90	95.17	93.40	90.95	46.24
LCK2	50.23	47.97	7.22	97.47	92.98	95.50	92.06	89.71	46.54
LCK3	45.77	44.55	6.68	98.44	94.97	97.32	93.55	91.09	46.56
5AL1	46.91	44.41	6.66	98.49	95.05	94.65	92.38	89.81	45.95
5AL2	47.43	44.68	6.72	98.40	94.83	94.19	89.83	87.28	45.02
5AL3	46.94	43.91	6.58	98.49	95.07	93.52	89.56	87.06	45.48

^{a, b}Q20 and Q30 indicate the ratio of the number of bases in the filtered reads greater than 20, 30 to the total number of bases, reflecting the quality of the sequencing data

ISSN: 1471-2229