Skip to main content

Table 1 Characteristics of the eight Ligusticum plastomes

From: Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

  L. capillaceum L. delavayi L. hispidum L. involucratum L. likiangense L. pteridophyllum L. scapiforme L. thomsonii
Raw reads (G) 6.17 7.52 6.5 7.24 5.87 7.21 5.83 6.09
Clean reads (G) 6.13 7.47 6.44 7.14 5.81 7.10 5.76 6.04
Mean coverage 294× 4334× 1695× 1626× 1197× 1549× 352× 2590×
GenBank numbers MT409612 MT409613 MT409614 MT409615 MT409616 MT409617 MT409618 MT409619
Plastome size (bp) 147,808 155,623 147,797 147,752 148,196 146,443 148,107 147,462
LSC (bp) 91,907 85,066 91,846 91,782 92,305 92,598 92,214 93,363
IRs (bp) 19,199 26,908 19,162 19,205 19,158 18,166 19,156 18,254
SSC (bp) 17,503 16,741 17,627 17,560 17,575 17,513 17,581 17,591
Total GC content (%) 37.5% 37.6% 37.3% 37.4% 37.5% 37.5% 37.5% 37.6%
LSC (%) 36.0% 35.7% 35.9% 35.9% 35.9% 35.9% 36.0% 36.0%
IR (%) 44.1% 42.5% 44.1% 44.0% 44.1% 44.8% 44.1% 44.8%
SSC (%) 31.0% 31.0% 30.9% 30.9% 31.0% 31.2% 31.0% 31.1%
Total gene numbers 129 133 129 129 129 129 129 129
Protein-coding 85(5) 88 (8) 85(5) 85(5) 85(5) 85(5) 85(5) 85(5)
tRNA 36 (6) 37 (7) 36 (6) 36 (6) 36 (6) 36 (6) 36 (6) 36 (6)
rRNA 8 (4) 8 (4) 8 (4) 8 (4) 8 (4) 8 (4) 8 (4) 8 (4)