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Table 2 The characteristics of 25 consensus loci associated with leaf-related traits, chlorophyll content and 100-seed weight across years and mapping populations

From: High-density QTL mapping of leaf-related traits and chlorophyll content in three soybean RIL populations

Namea

Traits-years-populationsb

Chr.c

Marker intervald

Positione

LODf

PVE(%)g

q1

LW4_2019_SE, LW4_2019_SE

1

Marker78716-Marker78952

984,367–984,667

2.86

12.28

q2–1

LL_2019_BG, 100-SW_2019_WD

2

Marker2375062-M2398952

5,036,099–5,089,021

2.76

8.77

q2–2

100SW_2019_SE, CC_2018_WD, CC_2019_WD

2

Gm02_72-Gm02_73

15,948,773–20,504,503

4.02

9.16

q3–1

LA_2019_BG, CC_2018_BG, CC_2019_BG

3

Marker946135-Marker945189

18,840,357–18,840,627

5.57

11.08

q3–2

CC_2018_WD, CC_2019_WD, LW_2019_WD 100SW_2019_BG

3

Marker974279-Marker963484

38,833,014–38,833,279

3.66

6.24

q4–1

100SW_2019_BG, LA_2018_WD, CC_2019_BG, 100SW_2018_BG, L/W_2018_WD

4

Marker155746-Marker7176

8,832,243–8,832,495

3.69

6.60

q4–2

LW_2019_BG, LA_2018_BG, LL_2019_BG, LA_2019_BG, LA_2018_WD, CC_2018_BG

4

Marker56301-Marker85908

40,171,476–40,171,747

3.28

8.30

q5–1

LA_2019_SE, LW_2019_SE, LA_2018_SE

5

Marker348516-Marker349213

31,386,634–31,386,733

3.26

8.01

q5–2

L/W_2019_WD, CC_2018_SE

5

Gm05_82-Gm05_83

41,012,328–41,053,017

2.64

2.74

q6

L/W_2019_WD, CC_2018_BG

6

Gm06_25-Gm06_26

8,267,811–8,524,123

4.11

4.39

q7

L/W_2018_WD, LW_2019_WD, LA_2019_WD, L/W_2019_WD

7

Gm07_68-Gm07_69

26,688,332–26,773,863

3.66

8.18

q8

CC_2018_BG, CC_2019_BG, LL_2019_BG

8

Marker2655981-Mrker2673143

1,796,491–1,796,812

3.05

5.85

q9–1

LW_2018_WD, LW_2019_WD, LA_2019_WD

9

Gm09_27-Gm09_28

4,248,062–4,381,966

3.24

7.11

q9–2

LA_2018_WD, LL_2018_WD

9

Gm09_92-Gm09_93

38,324,753–38,453,818

6.44

16.25

q10

LL_2018_WD

10

Gm10_28-Gm10_29

5,215,402–5,261,825

3.06

7.26

q11–1

LA_2018_WD, LW_2018_WD, L/W_2018_WD, LW_2018_SE, LA_2019_SE

11

Marker649826-Marker649720

5,906,321–5,906,420

3.15

6.00

q11–2

100SW_2018_BG, 100SW_2019_BG

11

Marker789315-Marker822756

24,450,424–24,450,687

8.52

23.80

q12–1

CC_2018_BG, CC_2019_BG, L/W_2018_SE

12

Marker179649-M195752

3,339,466–3,339,756

5.04

10.00

q12–2

CC_2019_WD, 100-SW_2019_WD

12

Gm12_53-Gm12_54

19,741,984–19,784,797

3.12

10.88

q13

LL_2018_SE, LW_2018_SE, LW_2018_BG, LL_2019_SE, CC_2018_BG, LL_2018_BG

13

Marker1729776-Marker1800330

35,339,389–35,339,673

3.23

8.47

q14

100-SW_2018_WD, LL_2018_BG

14

Marker562393-Marker489485

3,347,418–3,347,071

3.56

9.03

q15

100-SW_2018_WD, 100SW_2018_SE, 100SW_2019_SE

15

Marker888970-Marker891668

11,184,661–11,184,760

3.12

9.92

q16

CC_2018_WD, CC_2019_WD

16

Gm16_62-Gm16_63

32,211,900–32,464,530

3.88

12.13

q18

LA_2018_SE, LW_2018_WD, LA_2018_WD, L/W_2018_WD, L/W_2019_SE

18

Gm18_91-Gm18_92

55,902,104–56,060,463

10.22

25.16

q20

LL_2019_BG, CC_2018_SE, CC_2019_SE, LL_2018_WD, LW_2019_WD, LA_2019_WD, L/W_2019_WD, LA_2019_SE, LW_2018_SE, L/W_2018_SE, LL_2019_SE, LW_2019_SE, L/W_2019_SE, LA_2018_BG, LW_2019_BG, LA_2019_BG, LW_2018_BG, LL_2018_BG, LW_2018_WD, L/W_2018_WD, LL_2019_WD

20

Gm20_56-Gm20_57

35,359,456–35,474,870

32.59

42.44

  1. aThe name of the QTL is defined by the chromosome number
  2. bThe name of the QTLs is a composite of the target trait [leaf length (LL), leaf width (LW), leaf area (LA), leaf length to width ratio (L/W), chlorophyll content (CC), and 100 seed weight (100 SW)], followed by the environment (year), and mapping population
  3. cChr indicates chromosome. Major QTLs are shown in bold
  4. dInterval indicates the confidence interval between two markers
  5. ePosition indicates the physical position of the interval in the soybean genome
  6. fLOD is the average logarithm of odds score
  7. gPVE is the average phenotypic variance explained by the QTL
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BMC Plant Biology

ISSN: 1471-2229

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