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Table 2 The characteristics of 25 consensus loci associated with leaf-related traits, chlorophyll content and 100-seed weight across years and mapping populations

From: High-density QTL mapping of leaf-related traits and chlorophyll content in three soybean RIL populations

Namea Traits-years-populationsb Chr.c Marker intervald Positione LODf PVE(%)g
q1 LW4_2019_SE, LW4_2019_SE 1 Marker78716-Marker78952 984,367–984,667 2.86 12.28
q2–1 LL_2019_BG, 100-SW_2019_WD 2 Marker2375062-M2398952 5,036,099–5,089,021 2.76 8.77
q2–2 100SW_2019_SE, CC_2018_WD, CC_2019_WD 2 Gm02_72-Gm02_73 15,948,773–20,504,503 4.02 9.16
q3–1 LA_2019_BG, CC_2018_BG, CC_2019_BG 3 Marker946135-Marker945189 18,840,357–18,840,627 5.57 11.08
q3–2 CC_2018_WD, CC_2019_WD, LW_2019_WD 100SW_2019_BG 3 Marker974279-Marker963484 38,833,014–38,833,279 3.66 6.24
q4–1 100SW_2019_BG, LA_2018_WD, CC_2019_BG, 100SW_2018_BG, L/W_2018_WD 4 Marker155746-Marker7176 8,832,243–8,832,495 3.69 6.60
q4–2 LW_2019_BG, LA_2018_BG, LL_2019_BG, LA_2019_BG, LA_2018_WD, CC_2018_BG 4 Marker56301-Marker85908 40,171,476–40,171,747 3.28 8.30
q5–1 LA_2019_SE, LW_2019_SE, LA_2018_SE 5 Marker348516-Marker349213 31,386,634–31,386,733 3.26 8.01
q5–2 L/W_2019_WD, CC_2018_SE 5 Gm05_82-Gm05_83 41,012,328–41,053,017 2.64 2.74
q6 L/W_2019_WD, CC_2018_BG 6 Gm06_25-Gm06_26 8,267,811–8,524,123 4.11 4.39
q7 L/W_2018_WD, LW_2019_WD, LA_2019_WD, L/W_2019_WD 7 Gm07_68-Gm07_69 26,688,332–26,773,863 3.66 8.18
q8 CC_2018_BG, CC_2019_BG, LL_2019_BG 8 Marker2655981-Mrker2673143 1,796,491–1,796,812 3.05 5.85
q9–1 LW_2018_WD, LW_2019_WD, LA_2019_WD 9 Gm09_27-Gm09_28 4,248,062–4,381,966 3.24 7.11
q9–2 LA_2018_WD, LL_2018_WD 9 Gm09_92-Gm09_93 38,324,753–38,453,818 6.44 16.25
q10 LL_2018_WD 10 Gm10_28-Gm10_29 5,215,402–5,261,825 3.06 7.26
q11–1 LA_2018_WD, LW_2018_WD, L/W_2018_WD, LW_2018_SE, LA_2019_SE 11 Marker649826-Marker649720 5,906,321–5,906,420 3.15 6.00
q11–2 100SW_2018_BG, 100SW_2019_BG 11 Marker789315-Marker822756 24,450,424–24,450,687 8.52 23.80
q12–1 CC_2018_BG, CC_2019_BG, L/W_2018_SE 12 Marker179649-M195752 3,339,466–3,339,756 5.04 10.00
q12–2 CC_2019_WD, 100-SW_2019_WD 12 Gm12_53-Gm12_54 19,741,984–19,784,797 3.12 10.88
q13 LL_2018_SE, LW_2018_SE, LW_2018_BG, LL_2019_SE, CC_2018_BG, LL_2018_BG 13 Marker1729776-Marker1800330 35,339,389–35,339,673 3.23 8.47
q14 100-SW_2018_WD, LL_2018_BG 14 Marker562393-Marker489485 3,347,418–3,347,071 3.56 9.03
q15 100-SW_2018_WD, 100SW_2018_SE, 100SW_2019_SE 15 Marker888970-Marker891668 11,184,661–11,184,760 3.12 9.92
q16 CC_2018_WD, CC_2019_WD 16 Gm16_62-Gm16_63 32,211,900–32,464,530 3.88 12.13
q18 LA_2018_SE, LW_2018_WD, LA_2018_WD, L/W_2018_WD, L/W_2019_SE 18 Gm18_91-Gm18_92 55,902,104–56,060,463 10.22 25.16
q20 LL_2019_BG, CC_2018_SE, CC_2019_SE, LL_2018_WD, LW_2019_WD, LA_2019_WD, L/W_2019_WD, LA_2019_SE, LW_2018_SE, L/W_2018_SE, LL_2019_SE, LW_2019_SE, L/W_2019_SE, LA_2018_BG, LW_2019_BG, LA_2019_BG, LW_2018_BG, LL_2018_BG, LW_2018_WD, L/W_2018_WD, LL_2019_WD 20 Gm20_56-Gm20_57 35,359,456–35,474,870 32.59 42.44
  1. aThe name of the QTL is defined by the chromosome number
  2. bThe name of the QTLs is a composite of the target trait [leaf length (LL), leaf width (LW), leaf area (LA), leaf length to width ratio (L/W), chlorophyll content (CC), and 100 seed weight (100 SW)], followed by the environment (year), and mapping population
  3. cChr indicates chromosome. Major QTLs are shown in bold
  4. dInterval indicates the confidence interval between two markers
  5. ePosition indicates the physical position of the interval in the soybean genome
  6. fLOD is the average logarithm of odds score
  7. gPVE is the average phenotypic variance explained by the QTL