Table 1 The promising genes associated with salinity tolerance. The differentially expressed genes detected by more than one approach (common genes) and located on meta-QTLs regions overlying original QTLs for both yield components and ion homeostasis traits were assumed as promising candidate genes in this study (the pipeline is presented in Fig. 4)
From: Salt tolerance involved candidate genes in rice: an integrative meta-analysis approach
Gene ID | Gene name/ function | Meta position | Tissue (Expressed in) |
|---|---|---|---|
LOC_Os01g20980.1 | Pectinesterase | Chr1: M-QTL2 | Root |
LOC_Os01g22249.1 | Peroxidase | Chr1: M-QTL2 | Leaves |
LOC_Os02g06410.1 | CBS domain containing membrane protein | Chr2: M-QTL1 | Root |
LOC_Os02g06640.1 | Ubiquitin family protein, putative, expressed | Chr2:M-QTL1 | Leaves |
LOC_Os04g03810.1 | OsSub38, Putative Subtilisin homologue, expressed | Chr4:M-QTL1 | Root |
LOC_Os04g26870.1 | Oxidoreductase, aldo/keto reductase family | Chr4: M-QTL2 | Seedling |
LOC_Os04g06910.1 | Expressed protein | Chr4:M-QTL1 | Seedling |
LOC_Os04g10750.1 | Inorganic phosphate transporter | Chr4:M-QTL1 | Seedling |
LOC_Os05g42130.1 | MOC1,Transcription regulation, GRAS family | Chr5: M-QTL4 | Root |
LOC_Os05g39720.1 | WRKY70, Transcription regulation, Negative regulator of stomatal closure through SA- and ABA-mediated signaling | Chr5: M-QTL4 | Seedling |
LOC_Os05g39770.1 | Aminotransferase, putative, expressed | Chr5:M-QTL4 | Leaves |
LOC_Os05g38660.1 | Expressed protein | Chr5:M-QTL4 | Seedling |
LOC_Os05g40010.1 | LTPL17, Protease inhibitor/seed storage/LTP family protein precursor, Signal domain | Chr5:M-QTL4 | Seedling |
LOC_Os05g41670.1 | Expressed protein | Chr5:M-QTL4 | Seedling |
LOC_Os05g39990.1 | Plant-type cell wall organization | Chr5:M-QTL4 | Root |
LOC_Os05g39250.1 | Phosphatidylethanolamine | Chr5:M-QTL4 | Root |
LOC_Os06g48860.1 | OsSAUR28, Auxin-responsive SAUR gene family member, expressed | Chr6:M-QTL4 | Root |
LOC_Os06g48810.1 | OsHKT1, Na+ transporter, k+ transporter,cation transmembrane transporter activity | Chr6: M-QTL4 | Root and Leaves |
LOC_Os06g48300.1 | PP2C, protein serine/threonine phosphatase activity | Chr6: M-QTL4 | Root, Seedling & leaves |
LOC_Os06g49190.1 | LTPL154, Protease inhibitor/seed storage/LTP family protein precursor, Signal domain | Chr6:M-QTL4 | Seedling |