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Table 2 Analysis of the protein composition of the FCPs and protein subunits of the PSII and PSI core complexes of the different AEC fractions by mass spectrometry. Before analysis by MS the proteins of the different fractions were separated by SDS-PAGE as depicted in Fig. 5. Table 2 lists only those proteins that were detected with a minimum of two polypeptides and a protein coverage larger than 1000. The complete protein composition of the different AEC fractions with respect to FCPs, PSI and PSII proteins can be found in the Additional file 6

From: Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

Fraction number FCP proteins PS proteins
Fraction 1 Lhcx6_1 psbC
psbE
psbV
Fraction 2 Lhcf1 psbA
Lhcf2 psbB
Lhcf4 psbC
Lhcf5 psbD
Lhcf6 psbE
Lhcf7 psbV
Lhcf8  
Lhcf9 psaD
  psaF
Lhcx1 psaL
Lhcx2  
Lhcx5  
Lhcr3  
Fraction 3 Lhcf1 psbA
Lhcf2 psbC
Lhcf4 psbD
Lhcf5 psbE
Lhcf6 psbV
Lhcf8  
Lhcf9 psaD
  psaF
Lhcr3  
Lhcr14  
Fraction 4 Lhcf1 psbC
Lhcf2 psbE
Lhcf4  
Lhcf5 psaD
Lhcf6 psaF
Lhcf8 psaL
Lhcf9  
Lhcr1  
Lhcr3