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Table 2 Completeness and redundancy of Selaginella assemblies

From: Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species

  S. sellowii S. lepidophylla S. denticulata
Complete Longest isoforms Complete Longest isoforms Complete Longest isoforms
rnaQUAST
 Contigs 56,287 23,429 64,189 32,386 62,111 38,018
 Contigs > 1000 bp 37,086 8,080 31,815 7,684 32,281 13,344
 Average length (bp) 2631.69 1,309.19 1,962.86 1,036.79 1,650.37 1,094.03
 N50 length 4,482 3,007 4,061 2,789 2,825 2,034
 Total Assembled Bases 148,130,112 30,673,108 125,993,766 33,577,579 102,506,311 41,592,701
BUSCO
 Complete (single copy) 24.8% 77.2% 25.1% 75.6% 52.1% 77.9%
 Complete (duplicated) 70.3% 7.9% 68.0% 13.2% 46.2% 17.2%
 Fragmented 3.3% 12.5% 4.0% 7.9% 0.7% 4.0%
 Missing 1.6% 2.4% 2.9% 3.3% 1.0% 0.9%
Bowtie2
 Overall Alignment Rate 96.17% 93.86% 95.08% 92.25% 96.99% 94.57%
  1. The best values of relevant metrics are indicated in bold italic