Table 2 Completeness and redundancy of Selaginella assemblies
S. sellowii | S. lepidophylla | S. denticulata | ||||
|---|---|---|---|---|---|---|
Complete | Longest isoforms | Complete | Longest isoforms | Complete | Longest isoforms | |
rnaQUAST | ||||||
Contigs | 56,287 | 23,429 | 64,189 | 32,386 | 62,111 | 38,018 |
Contigs > 1000 bp | 37,086 | 8,080 | 31,815 | 7,684 | 32,281 | 13,344 |
Average length (bp) | 2631.69 | 1,309.19 | 1,962.86 | 1,036.79 | 1,650.37 | 1,094.03 |
N50 length | 4,482 | 3,007 | 4,061 | 2,789 | 2,825 | 2,034 |
Total Assembled Bases | 148,130,112 | 30,673,108 | 125,993,766 | 33,577,579 | 102,506,311 | 41,592,701 |
BUSCO | ||||||
Complete (single copy) | 24.8% | 77.2% | 25.1% | 75.6% | 52.1% | 77.9% |
Complete (duplicated) | 70.3% | 7.9% | 68.0% | 13.2% | 46.2% | 17.2% |
Fragmented | 3.3% | 12.5% | 4.0% | 7.9% | 0.7% | 4.0% |
Missing | 1.6% | 2.4% | 2.9% | 3.3% | 1.0% | 0.9% |
Bowtie2 | ||||||
Overall Alignment Rate | 96.17% | 93.86% | 95.08% | 92.25% | 96.99% | 94.57% |