Table 4 Identification of candidate genes for seven QTLs associated with mineral element content in a core set of 137 Canadian soybean lines. For each robust QTL (detected using multiple models in many environments), a region of interest was delimited by flanking markers in perfect LD with the peak SNP. The identifier and annotation of candidate genes residing within the relevant genomic regions are provided
From: Identification of loci controlling mineral element concentration in soybean seeds
Gm | QTL | Peak SNP | Size of LD block | # of genes | Candidate gene | Relevant annotation |
|---|---|---|---|---|---|---|
06 | Ca_#3 | 3,354,869 | 199 kb | 30 | Glyma.06G046000 | Calcium ion transport |
04 | K_#1 | 49,071,552 | 32 kb | 4 | NA | NA |
10 | K_#3 | 1,966,469 | 360 kb | 43 | Glyma.10G020000 | Potassium ion transport |
04 | P_#1 | 49,071,286 | 32 kb | 4 | NA | NA |
10 | S_#4 | 1,602,998 | 162 kb | 18 | NA | NA |
15 | S_#7 | 3,986,243 | 158 kb | 20 | NA | NA |
20 | S_#10 | 39,076,484 | 35 kb | 04 | Glyma.20G151500 | Sulfate assimilation |