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Table 3 Genes with intron(s) in Avena sativa plastome

From: Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny

Gene Region Exon I (bp) Intron I (bp) Exon II (bp) Intron II (bp) Exon III (bp)
atpF LSC 145+ 825 407+   
ndhA SSC 550 1021 539   
ndhB IRB 777 712 756   
ndhB IRA 777+ 712 756+   
petB LSC 6+ 759 642+   
petD LSC 8+ 741 475+   
rpl2 IRB 391 663 431   
rpl2 IRA 391+ 663 431+   
rpl16 LSC 9 1052 402   
rps12a LSC + IRB 114 232 799 29
rps12b LSC + IRA 114 232+ 799 29+
rps16 LSC 40 826 230   
trnA-UGC IRB 38+ 811 35+   
trnA-UGC IRA 38 811 35   
trnG-UCC LSC 23 677 48   
trnI-GAU IRB 37 807 35   
trnI-GAU IRA 37+ 807 35+   
trnK-UUU LSC 37 2435 35   
trnL-UAA LSC 35+ 33 50+   
trnV-UAC IRB 39+ 596 37+   
trnV-UAC IRA 39 596 37   
ycf3 LSC 126 755 226 725 161
  1. Superscript+: exon is transcribed counter-clockwise in Fig. 1;
  2. Superscript: exon is transcribed clockwise in Fig. 1;
  3. Hyphen–: spliceosomal intron;
  4. a,b: The rps12 gene is divided into 5′-rps12 in LSC region, a 3′-rps12 in IRB region and b 3′-rps12 in IRA region
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