Table 1 Details of the CcWRKY genes, their homologues in other species, the tissues in which they are expressed, and their responses to GA3 stress
GeneBank ID | The similar jute Genebank ID | Gene length (bp) | Predicted Protein (aa) | The homologous genes | Major tissue expressed | Stress response (GA3) | Subgroup | ||
|---|---|---|---|---|---|---|---|---|---|
GeneBank ID | RS(%) | GeneBank ID | RS(%) | ||||||
Ccv40018590 | OMO63625.1 | 96 | 2351 | 367 | XP_007011366.2(Tc) | 78 | Leaf-60d | Down | III |
Ccv40018580 | OMO66745.1 | 96 | 2506 | 315 | XP_017985156.1(Tc) | 69 | Stem bark-60d | Up | III |
Ccv40001440 | OMO76839.1 | 98 | 2757 | 585 | XP_007026134.2(Tc) | 82 | Stem bark-120d | Up | II-b |
Ccv40020010 | OMP05343.1 | 86 | 5580 | 304 | XP_012453828.1(Gr) | 74 | Leaf-60d | Up | II-c |
Ccv40016590 | OMO83201.1 | 100 | 2990 | 495 | XP_017978088.1(Tc) | 73 | Stem stick-60d | Down | II-e |
Ccv40017690 | OMO93890.1 | 100 | 2262 | 323 | XP_017978107.1(Tc) | 86 | Root-60d | Down | II-c |
Ccv40022560 | OMO96280.1 | 97 | 2915 | 348 | XP_007030538.1(Tc) | 85 | Root-60d | Down | II-d |
Ccv40015220 | OMO85692.1 | 100 | 2195 | 321 | EOY26052.1(Tc) | 91 | Stem stick-60d | Up | II-a |
Ccv40005710 | OMO76157.1 | 100 | 1753 | 288 | XP_017978072.1(Tc) | 90 | Root-60d | Up | II-e |
Ccv40044380 | OMO49660.1 | 100 | 2251 | 356 | XP_007048873.2(Tc) | 80 | Leaf-60d | Up | II-c |
Ccv40032460 | OMO55888.1 | 100 | 4295 | 247 | XP_007048165.1(Tc) | 86 | Root-60d | Up | II-c |
Ccv40047080 | OMO62542.1 | 94 | 3097 | 540 | EOX93439.1(Tc) | 75 | Stem bark-120d | Up | I |
Ccv40045520 | OMO88967.1 | 94 | 3033 | 688 | XP_021274893.1(Hu) | 79 | Root-60d | Down | II-b |
Ccv40037140 | OMO56614.1 | 100 | 5352 | 371 | XP_007047365.2(Tc) | 90 | Stem bark-60d | Up | II-d |
Ccv40052670 | OMO82944.1 | 100 | 3505 | 597 | EOY34631.1(Tc) | 91 | Stem bark-120d | Up | I |
Ccv40064170 | OMO51304.1 | 100 | 1923 | 415 | XP_017972970.1(Tc) | 68 | Root-60d | Down | II-e |
Ccv40065880 | OMO49950.1 | 100 | 3807 | 634 | EOY21754.1(Tc) | 80 | Leaf-60d | – | II-b |
Ccv40064890 | OMO75947.1 | 100 | 2128 | 391 | XP_021289025.1(Hu) | 72 | Leaf-60d | Down | III |
Ccv40068880 | OMO93415.1 | 90 | 6815 | 358 | EOY01748.1(Tc) | 75 | Stem bark-120d | Up | II-c |
Ccv40068550 | OMO93362.1 | 100 | 3898 | 531 | XP_007045981.2(Tc) | 86 | Leaf-60d | Down | I |
Ccv40090780 | OMO61573.1 | 100 | 10,945 | 761 | XP_007011727.2(Tc) | 80 | Stem bark-120d | Up | II-a |
Ccv40090200 | OMO86139.1 | 100 | 2932 | 341 | EOY29233.1(Tc) | 94 | Root-60d | Up | II-d |
Ccv40091890 | OMO61754.1 | 94 | 3748 | 515 | XP_021277197.1(Hu) | 84 | Stem bark-120d | Down | I |
Ccv40100130 | OMO83687.1 | 99 | 4632 | 561 | XP_007020620.2(Tc) | 91 | Root-60d | Down | I |
Ccv40098960 | OMO83839.1 | 96 | 4286 | 763 | XP_021287555.1(Hu) | 87 | Stem bark-120d | Down | I |
Ccv40105280 | OMO79927.1 | 95 | 2186 | 541 | XP_021286562.1(Hu) | 73 | Hypocotyl-10d | Down | II-b |
Ccv40100860 | OMO83490.1 | 97 | 3070 | 604 | XP_021287397.1(Hu) | 72 | Hypocotyl-10d | Up | II-b |
Ccv40120290 | OMO53862.1 | 100 | 2609 | 252 | XP_017975966.1(Hu) | 75 | Leaf-60d | Up | III |
Ccv40139610 | OMO72606.1 | 93 | 4237 | 513 | XP_021289195.1(Hu) | 84 | Leaf-60d | Down | I |
Ccv40136560 | OMO85052.1 | 100 | 2681 | 586 | XP_017977471.1(Tc) | 83 | Stem bark-120d | Up | I |
Ccv40154010 | OMO79587.1 | 100 | 1321 | 318 | XP_007040356.2(Tc) | 76 | Root-60d | – | II-e |
Ccv40154680 | OMO79733.1 | 100 | 2066 | 360 | XP_021278172.1(Hu) | 87 | Stem bark-120d | Up | III |
Ccv40151700 | OMP02240.1 | 100 | 1998 | 294 | XP_021284777.1(Hu) | 79 | Hypocotyl-10d | Down | II-d |
Ccv40168680 | OMO64133.1 | 96 | 3719 | 534 | XP_021281139.1(Hu) | 83 | Leaf-60d | Down | II-b |
Ccv40170690 | OMO64390.1 | 100 | 1985 | 344 | EOX95862.1(Tc) | 90 | Root-60d | Up | II-e |
Ccv40170160 | OMO64319.1 | 100 | 1854 | 337 | XP_007051596.2(Tc) | 85 | Stem bark-120d | Up | III |
Ccv40167830 | OMO64003.1 | 100 | 2345 | 285 | XP_017969931.1(Tc) | 85 | Root-60d | Down | II-e |
Ccv40167950 | OMO64022.1 | 100 | 1899 | 322 | XP_021279743.1(Hu) | 88 | Root-60d | Down | II-c |
Ccv40173800 | OMO78385.1 | 99 | 2664 | 368 | XP_007050397.2(Tc) | 93 | Root-60d | Down | II-d |
Ccv40178630 | OMO78893.1 | 100 | 2433 | 366 | XP_007017155.2(Tc) | 91 | Stem bark-120d | Up | II-d |
Ccv40212000 | OMO79225.1 | 100 | 2756 | 581 | XP_021297669.1(Hu) | 79 | Root-60d | Down | II-b |
Ccv40227280 | OMO53484.1 | 100 | 2278 | 365 | EOY06768.1(Tc) | 80 | Stem bark-120d | Up | II-c |
Ccv40228940 | OMO79363.1 | 100 | 4477 | 513 | XP_021297553.1(Hu) | 90 | Leaf-60d | Up | I |