Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

Table 2 Differentially expressed genes in LD blocks of markers with effect on salt stress-related traits in the Chr 2A

Marker^a R²(%), study	Gene relative expression^b	Annotation^c	Abiotic stress effect^d
RAC875_c38018_278	TraesCS2A02G389400: 1.5	Leucine zipper, homeobox-associated	[42] ↑, [43] ↑
RAC875_c38018_278	TraesCS2A02G389900: 1.0	Glutamate dehydrogenase	[42] ↑, [43] ↑
12.98, [28]	TraesCS2A02G395000: −2.4	Oxoglutarate/iron-dependent dioxygenase	[42] ↓
BS00041707_51	TraesCS2A02G327600: 2.1	Copper amine oxidase	[42] ↑, [43] ↑
12.5, [27]	TraesCS2A02G331100: 1.8	Amino acid transporter	[42] ↑

^aMarker names according to Wang et al. [44]
^bGFOLD values from tolerant genotypes are bold and from the susceptible are in italics
^cBased on the Interpro results from the RefSeq v1.0 annotation [45]
^dAbiotic stress response based on transcriptomics studies of drought and heat [42] and cold [43] deposited in the wheat expression atlas expVIP [46]. The direction of the arrows indicates the stress effect on expression, ↑ when the gene is up-regulated and ↓ when it is down-regulated

ISSN: 1471-2229