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Table 2 The 16 potential candidate genes controlling target traits predicted by two RNA-seq data

From: An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton

Gene ID

Gene Name

Description

Chr.

Start

End

Length (bp)

GH_D06G2180

COX5B-2

Cytochrome c oxidase subunit 5b-2, mitochondrial

D06

63,060,142

63,062,960

2819

GH_D07G2154

Acot9

Acyl-coenzyme A thioesterase 9, mitochondrial

D07

52,623,091

52,626,062

2972

GH_D12G2925

  

D12

61,121,419

61,121,910

492

GH_D12G2954

bro1

Vacuolar protein-sorting protein bro1

D12

61,342,250

61,347,159

4910

GH_D12G2952

HDG11

Homeobox-leucine zipper protein HDG11

D12

61,327,801

61,332,967

5167

GH_D12G2950

MYB52

Transcription factor MYB52

D12

61,304,801

61,306,952

2152

GH_D06G2164

At1g12280

Probable disease resistance protein At1g12280

D06

62,950,810

62,953,515

2706

GH_A02G1555

ZHD1

Zinc-finger homeodomain protein 1

A02

98,782,762

98,783,781

1020

GH_D07G2145

  

D07

52,419,774

52,428,479

8706

GH_D06G2165

ROD1

Phosphatidylcholine:diacylglycerol Cholinephosphotransferase 1

D06

62,958,995

62,961,025

2031

GH_D06G2153

NDC80

Probable kinetochore protein NDC80

D06

62,840,437

62,844,537

4101

GH_D07G2144

PYRAB13050

UPF0056 membrane protein PYRAB13050

D07

52,395,029

52,395,241

213

GH_D06G2162

KEG

E3 ubiquitin-protein ligase KEG

D06

62,930,295

62,932,383

2089

GH_D12G2934

xpr1

Xenotropic and polytropic retrovirus receptor 1 homolog

D12

61,194,759

61,195,031

273

GH_D06G2161

asnS

Asparagine--tRNA ligase

D06

62,926,856

62,929,336

2481

GH_D12G2926

rpc11

DNA-directed RNA polymerase III subunit RPC10

D12

61,125,552

61,126,483

932