Table 2 Markers associated with SHR resistance (p ≤0.01; q-value < 0.20). Physical mapping of the associated markers, as well as Molecular Function and Gene Onthology (GO) assignment were retrieved from Heliagene.org, using the genome XRQ v1.0 (Badouin et al. 2017) [22]
From: Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower
Marker | Chromosome | Position (bp) | Origin | Phenotypic variable | Molecular function | GOs |
|---|---|---|---|---|---|---|
SNP117 | 10 | 132,349,611 | Illumina SNP-array | DI, AUDPCI, IP | 3-oxo-Delta(4,5)-steroid 5-beta-reductase | P:cellular metabolic process; F:coenzyme binding; F:catalytic activity |
HaCOI_1 | 14 | 168,171,427 | CG (Talukder et al. 2014) [18] | DS, AUDPCI, IP | insensitivity to coronatine | F: protein binding |
HA1848 | 7 | – | SSR (Zubrzycki et al. 2017) [9] | DS, DI, AUDPCI | – | – |
SNP136 | 9 | 72,028,226 | Illumina SNP-array | DS, DI, AUDPCI | Beta-hexosaminidase 1 | P:carbohydrate metabolic process; C:cytoplasmic membrane-bounded vesicle; F:beta-N-acetylhexosaminidase activity; F:cation binding |
SNP144 | 13 | 14,745,225 | Illumina SNP-array | DI, AUDPCI | Tyrosine transaminase family protein | F:pyridoxal phosphate binding; P:cellular amino acid and derivative metabolic process; F:1-aminocyclopropane-1-carboxylate synthase activity; P:vitamin E biosynthetic process; F:L-tyrosine:2-oxoglutarate aminotransferase activity |
SNP128 | 12 | 18,758,084 | Illumina SNP-array | DI, AUDPCI | Germin-Like Protein 3 (HaGLP3) | F:superoxide dismutase activity; C:plant-type cell wall; F:oxalate oxidase activity; F:nutrient reservoir activity; P:oxidation reduction; P:auxin-mediated signaling pathway; F:oxidoreductase activity; |
G33 | 16 | 62,306,954 | CG (Zhao et al. 2007) [34] | DS | Radical SAM superfamily protein | F: catalytic activity; iron-sulfur cluster binding |
SNP125 | 2 | 120,750,653 | Illumina SNP-array | DI | Xylulose kinase-2 | phosphate metabolic process;transferase activity, transferring phosphorus-containing groups;phosphotransferase activity, alcohol group as acceptor;primary metabolic process;carbohydrate metabolic process |
SNP80 | 14 | 170,322,057 | Illumina SNP-array | DI | Embryonic flower 2 | P:genetic imprinting; P:negative regulation of flower development; F:transcription factor activity; C:nucleus |
SNP60 | 10 | 173,066,810 | Illumina SNP-array | DI | Serine-threonine/tyrosine-protein kinase | P: protein phosphorylation, F: Protein- serine/threonine kinase activity, F: ATP binding. |
G34 | 14 | 137,657,256 | CG (Zhao et al. 2007) [34] | DI | ATP-binding cassette, subfamily C, member 9 | P: potassium ion transport; F: ATP binding; sulfonylurea receptor activity; C: membrane |
SNP23 | 15 | 16,332,782 | Illumina SNP-array | IP | Rho-associated protein kinase 1/2 | P:protein amino acid phosphorylation; F:ATP binding; F:protein serine/threonine kinase activity |
SNP44 | 6 | 52,738,650 | Illumina SNP-array | DS | GRAS family transcription factor | P: positive regulation of transcription, DNA-templated regulation of transcription, DNA-templated, response to chitin, response to xenobiotic stimulus; F: DNA-binding transcription factor activity, sequence-specific DNA binding |