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Table 1 Summary of mapping and assembly statistics of the Sonneratia alba transcriptomes

From: Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba

SampleReplicateMapping to genomeMultiple mappedUniquely mappedNumber of transcriptsAverage size (bp)N50 (bp)
Number (×  106)%Number (× 106)%Number (× 106)%
L0r152.2694.590.440.8451.8299.1636,66433954301
 r242.2794.120.641.5141.6498.4935,97033784235
L250r139.8594.020.421.0539.4398.9533,93033184214
 r239.3693.850.611.5438.7598.4635,40233944273
L500r155.6694.010.591.0655.0898.9434,11632984221
 r243.4193.990.872.0142.5497.9934,33434434338
R0r145.4793.970.491.0944.9798.9140,93734714352
 r243.0194.431.924.4741.0895.5340,00534694380
R250r144.2094.480.491.1243.7198.8840,69634254363
 r240.7894.581.994.8838.7995.1240,48334764383
R500r152.2394.580.771.4751.4698.5340,33835304437
 r240.6394.831.132.7939.4997.2139,42635034391
  1. L and R represent leaf and root tissues; 0, 250 and 500 represent the salinity treatments (mM NaCl); r1 and r2 indicate two biological replicates with three individuals each. For each sample, RNA-seq reads mapping and genome-guided transcriptome assembly were performed individually