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Table 4 KEGG pathway enrichment of 1209 DEGs

From: Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

Pathway ID

Pathway

Number of DEGs

P-value

Q-value

ko00941

Flavonoid biosynthesis

19

0.000016

0.002007

ko00901

Indole alkaloid biosynthesis

14

0.000042

0.002610

ko04016

MAPK signalling pathway - plant

60

0.000474

0.019427

ko04626

Plant-pathogen interaction

59

0.001099

0.033788

ko00940

Phenylpropanoid biosynthesis

34

0.001932

0.047538

  1. Pathways with a Q-value < 0.05 are shown