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Table 1 Summary of SNPs obtained in different genotypes

From: ddRAD sequencing-based identification of inter-genepool SNPs and association analysis in Brassica juncea

Samples Total Reads Total of reads after pre-processing No. of reads mapped Percent reads mapped Percent uniquely mapped reads SNPs at 10x coverage
Zem 1 2,310,662 2,291,416 2,156,974 94.13 83.60 1251
Donskaja IV 2,361,678 2,350,360 2,201,589 93.67 83.72 1273
EC- 287711 3,462,876 3,437,132 3,231,248 94.03 84.19 1860
Pusa Tarak 7,521,368 7,438,610 6,885,178 92.56 83.25 2127
Urvashi 3,731,080 3,714,434 3,504,568 94.35 81.37 1898
RSPR-01 3,621,796 3,597,428 3,375,826 93.84 82.50 1990