Table 1 Candidate genes, in the genome of other C4 species, that are near to homologous sequences to the SSR markers M28_161 and M35_202
From: Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus)
Marker | Candidate gene | Reference genome | Chra | Biological pathway | Ortholog locus on A. thaliana | Locus positionb | Marker position |
|---|---|---|---|---|---|---|---|
M28_161 | Sevir. 3G340800 | Setaria viridis | 3 | Xyloglucan biosynthetic process; salicylic acid mediated | AT2G20370 | 40,675,315 | 40,676,270 |
M28_161 | Pahal. G00901 | Panicum halli | 7 | Lignin biosynthetic process; cell wall organization | AT5G48930 | 29,711,375 | 29,776,838 |
M28_161 | Pahal. G00889 | Panicum halli | 7 | Salicylic acid mediated | AT5G05190 | 29,776,838 | 29,776,838 |
M28_161 | Pahal. E03247 | Panicum halli | 5 | Response to abscisic acid | AT3G05880 | 49,635,160 | 49,627,286 |
M28_161 | Pavir. 8KG357500 | Panicum virgatum | 8 | Lignin catabolic process, oxidation-reduction process | AT3G09220 | 72,822,520 | 72,841,944 |
M35_202 | Sevir. 7G164200 | Setaria viridis | 7 | Lignin biosynthetic process; cell wall organization | AT5G48930 | 23,027,630 | 23,030,255 |